Hb_000243_280

Information

Type -
Description -
Location Contig243: 258298-259307
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_280 0.0 - - -
2 Hb_155375_010 0.1115621851 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
3 Hb_003747_040 0.1229054994 - - -
4 Hb_000510_090 0.143884664 - - 40S ribosomal protein S15 [Morus notabilis]
5 Hb_000347_340 0.1545486387 - - ring finger, putative [Ricinus communis]
6 Hb_001976_050 0.159124071 - - PREDICTED: protein SKIP34 [Jatropha curcas]
7 Hb_000094_020 0.1612477597 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
8 Hb_006909_030 0.1613551265 - - 40S ribosomal protein S17B [Hevea brasiliensis]
9 Hb_000032_540 0.1614313776 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
10 Hb_004297_100 0.1623400922 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
11 Hb_000705_220 0.165350874 - - unnamed protein product [Vitis vinifera]
12 Hb_000200_210 0.1657886913 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001930_050 0.1679712205 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
14 Hb_143813_010 0.1680806208 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
15 Hb_001274_030 0.1682410349 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
16 Hb_005611_010 0.1689608236 - - PREDICTED: protein prune homolog [Jatropha curcas]
17 Hb_002375_020 0.1698374836 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
18 Hb_023226_010 0.1700127664 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
19 Hb_000099_240 0.1707643329 - - 60S ribosomal protein L7a, putative [Ricinus communis]
20 Hb_000103_140 0.1709749848 - - ribosomal protein S3a [Populus trichocarpa]

Gene co-expression network

sample Hb_000243_280 Hb_000243_280 Hb_155375_010 Hb_155375_010 Hb_000243_280--Hb_155375_010 Hb_003747_040 Hb_003747_040 Hb_000243_280--Hb_003747_040 Hb_000510_090 Hb_000510_090 Hb_000243_280--Hb_000510_090 Hb_000347_340 Hb_000347_340 Hb_000243_280--Hb_000347_340 Hb_001976_050 Hb_001976_050 Hb_000243_280--Hb_001976_050 Hb_000094_020 Hb_000094_020 Hb_000243_280--Hb_000094_020 Hb_155375_010--Hb_000510_090 Hb_155375_010--Hb_001976_050 Hb_002217_310 Hb_002217_310 Hb_155375_010--Hb_002217_310 Hb_000749_150 Hb_000749_150 Hb_155375_010--Hb_000749_150 Hb_000620_080 Hb_000620_080 Hb_155375_010--Hb_000620_080 Hb_015026_120 Hb_015026_120 Hb_003747_040--Hb_015026_120 Hb_001274_030 Hb_001274_030 Hb_003747_040--Hb_001274_030 Hb_003777_270 Hb_003777_270 Hb_003747_040--Hb_003777_270 Hb_002890_280 Hb_002890_280 Hb_003747_040--Hb_002890_280 Hb_003747_040--Hb_000510_090 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_000771_100 Hb_000771_100 Hb_000347_340--Hb_000771_100 Hb_000347_340--Hb_000510_090 Hb_000347_340--Hb_004724_100 Hb_102156_010 Hb_102156_010 Hb_000347_340--Hb_102156_010 Hb_002272_260 Hb_002272_260 Hb_000347_340--Hb_002272_260 Hb_000347_340--Hb_000620_080 Hb_000032_540 Hb_000032_540 Hb_001976_050--Hb_000032_540 Hb_143947_010 Hb_143947_010 Hb_001976_050--Hb_143947_010 Hb_001976_050--Hb_000510_090 Hb_000705_220 Hb_000705_220 Hb_001976_050--Hb_000705_220 Hb_002259_030 Hb_002259_030 Hb_001976_050--Hb_002259_030 Hb_004297_100 Hb_004297_100 Hb_000094_020--Hb_004297_100 Hb_002316_060 Hb_002316_060 Hb_000094_020--Hb_002316_060 Hb_004807_060 Hb_004807_060 Hb_000094_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_000094_020--Hb_003746_060 Hb_005611_010 Hb_005611_010 Hb_000094_020--Hb_005611_010 Hb_005496_030 Hb_005496_030 Hb_000094_020--Hb_005496_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39684 1.00249 0.739756 1.24589 0.947787 4.21072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7001 3.5056 2.11479 0.936256 0

CAGE analysis