Hb_000094_020

Information

Type -
Description -
Location Contig94: 21780-22450
Sequence    

Annotation

kegg
ID rcu:RCOM_1594370
description ribosomal protein L27, putative
nr
ID ADR71247.1
description Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
swissprot
ID Q2GCN3
description 50S ribosomal protein L27 OS=Neorickettsia sennetsu (strain Miyayama) GN=rpmA PE=3 SV=1
trembl
ID I3NML0
description Mitochondrial 50S ribosomal protein L27 OS=Hevea brasiliensis GN=mRPL27 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_020 0.0 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
2 Hb_004297_100 0.110319432 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
3 Hb_002316_060 0.1170053538 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
4 Hb_004807_060 0.1245351566 - - -
5 Hb_003746_060 0.1297738073 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
6 Hb_005611_010 0.1311852344 - - PREDICTED: protein prune homolog [Jatropha curcas]
7 Hb_005496_030 0.1315405392 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
8 Hb_000483_160 0.1322279657 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
9 Hb_000196_050 0.1326008941 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
10 Hb_003058_220 0.1332733693 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
11 Hb_001247_350 0.1333968268 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
12 Hb_007432_080 0.1343575568 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
13 Hb_000815_260 0.13460741 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
14 Hb_005653_080 0.1375646177 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
15 Hb_000948_190 0.1380943082 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
16 Hb_000268_010 0.1393349879 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001133_020 0.1398300708 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
18 Hb_005224_050 0.1411146113 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
19 Hb_000193_350 0.1420258904 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
20 Hb_011161_040 0.1422426455 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000094_020 Hb_000094_020 Hb_004297_100 Hb_004297_100 Hb_000094_020--Hb_004297_100 Hb_002316_060 Hb_002316_060 Hb_000094_020--Hb_002316_060 Hb_004807_060 Hb_004807_060 Hb_000094_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_000094_020--Hb_003746_060 Hb_005611_010 Hb_005611_010 Hb_000094_020--Hb_005611_010 Hb_005496_030 Hb_005496_030 Hb_000094_020--Hb_005496_030 Hb_000483_160 Hb_000483_160 Hb_004297_100--Hb_000483_160 Hb_001019_090 Hb_001019_090 Hb_004297_100--Hb_001019_090 Hb_004297_100--Hb_005611_010 Hb_000200_210 Hb_000200_210 Hb_004297_100--Hb_000200_210 Hb_000617_320 Hb_000617_320 Hb_004297_100--Hb_000617_320 Hb_023732_070 Hb_023732_070 Hb_004297_100--Hb_023732_070 Hb_000438_220 Hb_000438_220 Hb_002316_060--Hb_000438_220 Hb_000196_050 Hb_000196_050 Hb_002316_060--Hb_000196_050 Hb_003943_130 Hb_003943_130 Hb_002316_060--Hb_003943_130 Hb_001369_640 Hb_001369_640 Hb_002316_060--Hb_001369_640 Hb_001314_100 Hb_001314_100 Hb_002316_060--Hb_001314_100 Hb_001946_210 Hb_001946_210 Hb_002316_060--Hb_001946_210 Hb_001057_050 Hb_001057_050 Hb_004807_060--Hb_001057_050 Hb_000193_350 Hb_000193_350 Hb_004807_060--Hb_000193_350 Hb_003058_220 Hb_003058_220 Hb_004807_060--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_004807_060--Hb_005224_050 Hb_014834_140 Hb_014834_140 Hb_004807_060--Hb_014834_140 Hb_003746_060--Hb_000617_320 Hb_003746_060--Hb_000193_350 Hb_029888_020 Hb_029888_020 Hb_003746_060--Hb_029888_020 Hb_011257_010 Hb_011257_010 Hb_003746_060--Hb_011257_010 Hb_000995_050 Hb_000995_050 Hb_003746_060--Hb_000995_050 Hb_007166_050 Hb_007166_050 Hb_005611_010--Hb_007166_050 Hb_005611_010--Hb_001019_090 Hb_005611_010--Hb_000200_210 Hb_005611_010--Hb_000483_160 Hb_022250_040 Hb_022250_040 Hb_005611_010--Hb_022250_040 Hb_000526_040 Hb_000526_040 Hb_005496_030--Hb_000526_040 Hb_000545_150 Hb_000545_150 Hb_005496_030--Hb_000545_150 Hb_001638_260 Hb_001638_260 Hb_005496_030--Hb_001638_260 Hb_001247_350 Hb_001247_350 Hb_005496_030--Hb_001247_350 Hb_002716_090 Hb_002716_090 Hb_005496_030--Hb_002716_090 Hb_000617_090 Hb_000617_090 Hb_005496_030--Hb_000617_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33188 0.610715 0.545188 0.844027 0.897676 2.42854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33523 3.36278 1.22788 0.392042 0

CAGE analysis