Hb_011257_010

Information

Type -
Description -
Location Contig11257: 16759-19292
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011257_010 0.0 - - -
2 Hb_000723_090 0.1245851574 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000465_040 0.128605558 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
4 Hb_004944_010 0.1301055584 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
5 Hb_023001_050 0.130471645 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
6 Hb_000349_060 0.1307709338 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
7 Hb_000084_290 0.1313625476 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
8 Hb_011537_010 0.1330117832 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
9 Hb_141131_010 0.133958916 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
10 Hb_005489_130 0.1339693752 - - calmodulin, putative [Ricinus communis]
11 Hb_000622_100 0.1340442472 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
12 Hb_025236_040 0.1347166356 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007632_090 0.1351172361 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
14 Hb_000690_080 0.1352038339 transcription factor TF Family: HB -
15 Hb_002217_310 0.1352886715 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
16 Hb_002400_220 0.1355484694 - - Vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_000163_160 0.1365431759 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
18 Hb_003874_020 0.1368187425 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
19 Hb_001124_210 0.1368292772 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000200_210 0.1378724863 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011257_010 Hb_011257_010 Hb_000723_090 Hb_000723_090 Hb_011257_010--Hb_000723_090 Hb_000465_040 Hb_000465_040 Hb_011257_010--Hb_000465_040 Hb_004944_010 Hb_004944_010 Hb_011257_010--Hb_004944_010 Hb_023001_050 Hb_023001_050 Hb_011257_010--Hb_023001_050 Hb_000349_060 Hb_000349_060 Hb_011257_010--Hb_000349_060 Hb_000084_290 Hb_000084_290 Hb_011257_010--Hb_000084_290 Hb_000723_090--Hb_000465_040 Hb_002105_090 Hb_002105_090 Hb_000723_090--Hb_002105_090 Hb_000500_130 Hb_000500_130 Hb_000723_090--Hb_000500_130 Hb_000316_110 Hb_000316_110 Hb_000723_090--Hb_000316_110 Hb_159558_030 Hb_159558_030 Hb_000723_090--Hb_159558_030 Hb_002400_220 Hb_002400_220 Hb_000723_090--Hb_002400_220 Hb_000457_110 Hb_000457_110 Hb_000465_040--Hb_000457_110 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_000465_040--Hb_002105_090 Hb_000714_030 Hb_000714_030 Hb_000465_040--Hb_000714_030 Hb_000465_040--Hb_000084_290 Hb_004944_010--Hb_000349_060 Hb_000690_080 Hb_000690_080 Hb_004944_010--Hb_000690_080 Hb_141131_010 Hb_141131_010 Hb_004944_010--Hb_141131_010 Hb_004944_010--Hb_000457_110 Hb_003874_020 Hb_003874_020 Hb_004944_010--Hb_003874_020 Hb_003038_030 Hb_003038_030 Hb_004944_010--Hb_003038_030 Hb_003502_080 Hb_003502_080 Hb_023001_050--Hb_003502_080 Hb_023001_050--Hb_000349_060 Hb_105386_010 Hb_105386_010 Hb_023001_050--Hb_105386_010 Hb_000465_430 Hb_000465_430 Hb_023001_050--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_023001_050--Hb_005016_170 Hb_012092_010 Hb_012092_010 Hb_023001_050--Hb_012092_010 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_000349_060--Hb_105386_010 Hb_001358_030 Hb_001358_030 Hb_000349_060--Hb_001358_030 Hb_000349_060--Hb_000465_430 Hb_000742_140 Hb_000742_140 Hb_000084_290--Hb_000742_140 Hb_025236_040 Hb_025236_040 Hb_000084_290--Hb_025236_040 Hb_009767_120 Hb_009767_120 Hb_000084_290--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000084_290--Hb_011828_050 Hb_000084_290--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000084_290--Hb_002983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44266 0.513977 0.598865 1.05243 1.46062 2.26231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92792 1.66574 0.73096 0.388041 0

CAGE analysis