Hb_029888_020

Information

Type -
Description -
Location Contig29888: 13962-14633
Sequence    

Annotation

kegg
ID pvu:PHAVU_007G268100g
description hypothetical protein
nr
ID XP_007145791.1
description hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
swissprot
ID O95478
description Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=NSA2 PE=1 SV=1
trembl
ID V7BL54
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G268100g PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosome biogenesis protein nsa2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029888_020 0.0 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
2 Hb_086703_010 0.131681111 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
3 Hb_004807_060 0.1339281305 - - -
4 Hb_003746_060 0.1376223068 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
5 Hb_000193_350 0.1428145792 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
6 Hb_017711_010 0.1430767356 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
7 Hb_004502_080 0.1436208167 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
8 Hb_003405_060 0.143963227 - - -
9 Hb_003058_070 0.1441611851 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
10 Hb_001057_050 0.1444425576 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
11 Hb_002293_030 0.1447940668 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
12 Hb_004712_180 0.1459572081 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000617_320 0.1478498128 - - 40S ribosomal protein S21B [Hevea brasiliensis]
14 Hb_011174_010 0.1478712354 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
15 Hb_009787_010 0.1490160109 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
16 Hb_014834_140 0.149589884 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
17 Hb_000061_330 0.1522168718 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
18 Hb_025193_050 0.1545024429 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
19 Hb_000057_070 0.1562952898 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
20 Hb_000065_080 0.1564997219 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_029888_020 Hb_029888_020 Hb_086703_010 Hb_086703_010 Hb_029888_020--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_029888_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_029888_020--Hb_003746_060 Hb_000193_350 Hb_000193_350 Hb_029888_020--Hb_000193_350 Hb_017711_010 Hb_017711_010 Hb_029888_020--Hb_017711_010 Hb_004502_080 Hb_004502_080 Hb_029888_020--Hb_004502_080 Hb_000771_100 Hb_000771_100 Hb_086703_010--Hb_000771_100 Hb_003043_070 Hb_003043_070 Hb_086703_010--Hb_003043_070 Hb_000155_180 Hb_000155_180 Hb_086703_010--Hb_000155_180 Hb_001269_320 Hb_001269_320 Hb_086703_010--Hb_001269_320 Hb_003011_040 Hb_003011_040 Hb_086703_010--Hb_003011_040 Hb_003405_060 Hb_003405_060 Hb_086703_010--Hb_003405_060 Hb_001057_050 Hb_001057_050 Hb_004807_060--Hb_001057_050 Hb_004807_060--Hb_000193_350 Hb_003058_220 Hb_003058_220 Hb_004807_060--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_004807_060--Hb_005224_050 Hb_014834_140 Hb_014834_140 Hb_004807_060--Hb_014834_140 Hb_000094_020 Hb_000094_020 Hb_004807_060--Hb_000094_020 Hb_000617_320 Hb_000617_320 Hb_003746_060--Hb_000617_320 Hb_003746_060--Hb_000094_020 Hb_003746_060--Hb_000193_350 Hb_011257_010 Hb_011257_010 Hb_003746_060--Hb_011257_010 Hb_000995_050 Hb_000995_050 Hb_003746_060--Hb_000995_050 Hb_000175_400 Hb_000175_400 Hb_000193_350--Hb_000175_400 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_000193_350--Hb_017711_010 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090 Hb_017711_010--Hb_005224_050 Hb_002293_030 Hb_002293_030 Hb_017711_010--Hb_002293_030 Hb_017711_010--Hb_000175_400 Hb_017711_010--Hb_003058_220 Hb_000009_040 Hb_000009_040 Hb_017711_010--Hb_000009_040 Hb_000175_040 Hb_000175_040 Hb_004502_080--Hb_000175_040 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_019033_010 Hb_019033_010 Hb_004502_080--Hb_019033_010 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.81387 2.28589 3.14299 3.31954 6.58207 18.9171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3061 22.9832 2.28639 2.05929 0.686746

CAGE analysis