Hb_000705_220

Information

Type -
Description -
Location Contig705: 129801-130753
Sequence    

Annotation

kegg
ID pop:POPTR_2033s00200g
description zinc transporter family protein
nr
ID CBI16051.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q6DBM8
description Metal tolerance protein B OS=Arabidopsis thaliana GN=MTPB PE=2 SV=1
trembl
ID U7DV99
description Zinc transporter family protein OS=Populus trichocarpa GN=POPTR_2033s00200g PE=4 SV=1
Gene Ontology
ID GO:0044763
description metal tolerance protein b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_220 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_001976_050 0.1271129535 - - PREDICTED: protein SKIP34 [Jatropha curcas]
3 Hb_020902_010 0.1273140903 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
4 Hb_005410_040 0.1339087276 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
5 Hb_155375_010 0.1372006306 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
6 Hb_005735_030 0.1538325188 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000032_540 0.1555936224 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
8 Hb_004735_010 0.1566452239 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
9 Hb_001981_070 0.1575344409 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
10 Hb_000510_090 0.1609307855 - - 40S ribosomal protein S15 [Morus notabilis]
11 Hb_138413_010 0.1619280531 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
12 Hb_000243_280 0.165350874 - - -
13 Hb_034585_030 0.1660938048 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
14 Hb_066807_010 0.1665657701 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
15 Hb_000442_160 0.1669934298 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
16 Hb_000878_130 0.1681822222 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001902_050 0.168793202 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
18 Hb_000749_150 0.1727207848 - - -
19 Hb_002259_030 0.1745921983 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001014_220 0.1748249196 - - PREDICTED: mediator-associated protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_220 Hb_000705_220 Hb_001976_050 Hb_001976_050 Hb_000705_220--Hb_001976_050 Hb_020902_010 Hb_020902_010 Hb_000705_220--Hb_020902_010 Hb_005410_040 Hb_005410_040 Hb_000705_220--Hb_005410_040 Hb_155375_010 Hb_155375_010 Hb_000705_220--Hb_155375_010 Hb_005735_030 Hb_005735_030 Hb_000705_220--Hb_005735_030 Hb_000032_540 Hb_000032_540 Hb_000705_220--Hb_000032_540 Hb_001976_050--Hb_155375_010 Hb_001976_050--Hb_000032_540 Hb_143947_010 Hb_143947_010 Hb_001976_050--Hb_143947_010 Hb_000510_090 Hb_000510_090 Hb_001976_050--Hb_000510_090 Hb_002259_030 Hb_002259_030 Hb_001976_050--Hb_002259_030 Hb_036034_010 Hb_036034_010 Hb_020902_010--Hb_036034_010 Hb_000878_130 Hb_000878_130 Hb_020902_010--Hb_000878_130 Hb_000307_200 Hb_000307_200 Hb_020902_010--Hb_000307_200 Hb_012286_050 Hb_012286_050 Hb_020902_010--Hb_012286_050 Hb_014568_030 Hb_014568_030 Hb_020902_010--Hb_014568_030 Hb_004735_010 Hb_004735_010 Hb_020902_010--Hb_004735_010 Hb_005215_080 Hb_005215_080 Hb_005410_040--Hb_005215_080 Hb_005410_040--Hb_020902_010 Hb_005410_040--Hb_155375_010 Hb_005410_040--Hb_000510_090 Hb_000442_160 Hb_000442_160 Hb_005410_040--Hb_000442_160 Hb_155375_010--Hb_000510_090 Hb_002217_310 Hb_002217_310 Hb_155375_010--Hb_002217_310 Hb_000243_280 Hb_000243_280 Hb_155375_010--Hb_000243_280 Hb_000749_150 Hb_000749_150 Hb_155375_010--Hb_000749_150 Hb_000620_080 Hb_000620_080 Hb_155375_010--Hb_000620_080 Hb_024714_030 Hb_024714_030 Hb_005735_030--Hb_024714_030 Hb_119583_010 Hb_119583_010 Hb_005735_030--Hb_119583_010 Hb_000236_300 Hb_000236_300 Hb_005735_030--Hb_000236_300 Hb_000847_070 Hb_000847_070 Hb_005735_030--Hb_000847_070 Hb_066807_010 Hb_066807_010 Hb_005735_030--Hb_066807_010 Hb_000365_360 Hb_000365_360 Hb_005735_030--Hb_000365_360 Hb_000032_540--Hb_002259_030 Hb_000189_530 Hb_000189_530 Hb_000032_540--Hb_000189_530 Hb_011161_040 Hb_011161_040 Hb_000032_540--Hb_011161_040 Hb_000175_400 Hb_000175_400 Hb_000032_540--Hb_000175_400 Hb_011016_090 Hb_011016_090 Hb_000032_540--Hb_011016_090 Hb_000144_090 Hb_000144_090 Hb_000032_540--Hb_000144_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3991 0.526362 0.199206 0.716127 1.62223 5.35546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.933521 2.34635 1.89724 0.62442 0

CAGE analysis