Hb_036034_010

Information

Type -
Description -
Location Contig36034: 160-705
Sequence    

Annotation

kegg
ID rcu:RCOM_0724580
description hypothetical protein
nr
ID XP_002524890.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37116: 375-660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036034_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020902_010 0.0931049007 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
3 Hb_000077_050 0.1071588267 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000307_200 0.1075627341 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
5 Hb_012286_050 0.1105552305 - - PREDICTED: syntaxin-61 [Jatropha curcas]
6 Hb_014568_030 0.110891352 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
7 Hb_041091_010 0.1135312561 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
8 Hb_001014_220 0.1139529738 - - PREDICTED: mediator-associated protein 2 [Jatropha curcas]
9 Hb_022288_010 0.117046611 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
10 Hb_185467_020 0.1234406992 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_002391_110 0.1269725091 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
12 Hb_004852_030 0.1319335258 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
13 Hb_006026_040 0.1337435218 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
14 Hb_000122_130 0.1343527768 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001584_110 0.1345534887 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
16 Hb_000599_120 0.1352581027 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
17 Hb_006455_090 0.1355323556 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
18 Hb_008453_150 0.1358716299 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
19 Hb_012055_020 0.1359483822 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
20 Hb_000671_100 0.136464056 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]

Gene co-expression network

sample Hb_036034_010 Hb_036034_010 Hb_020902_010 Hb_020902_010 Hb_036034_010--Hb_020902_010 Hb_000077_050 Hb_000077_050 Hb_036034_010--Hb_000077_050 Hb_000307_200 Hb_000307_200 Hb_036034_010--Hb_000307_200 Hb_012286_050 Hb_012286_050 Hb_036034_010--Hb_012286_050 Hb_014568_030 Hb_014568_030 Hb_036034_010--Hb_014568_030 Hb_041091_010 Hb_041091_010 Hb_036034_010--Hb_041091_010 Hb_000878_130 Hb_000878_130 Hb_020902_010--Hb_000878_130 Hb_020902_010--Hb_000307_200 Hb_020902_010--Hb_012286_050 Hb_020902_010--Hb_014568_030 Hb_004735_010 Hb_004735_010 Hb_020902_010--Hb_004735_010 Hb_000077_050--Hb_014568_030 Hb_001584_110 Hb_001584_110 Hb_000077_050--Hb_001584_110 Hb_003434_060 Hb_003434_060 Hb_000077_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000077_050--Hb_000390_060 Hb_000230_330 Hb_000230_330 Hb_000077_050--Hb_000230_330 Hb_000462_150 Hb_000462_150 Hb_000077_050--Hb_000462_150 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_006455_090 Hb_006455_090 Hb_012286_050--Hb_006455_090 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010 Hb_014568_030--Hb_001584_110 Hb_002014_080 Hb_002014_080 Hb_014568_030--Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_014568_030--Hb_024714_030 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_011282_030 Hb_011282_030 Hb_014568_030--Hb_011282_030 Hb_041091_010--Hb_001584_110 Hb_000803_150 Hb_000803_150 Hb_041091_010--Hb_000803_150 Hb_001871_040 Hb_001871_040 Hb_041091_010--Hb_001871_040 Hb_041091_010--Hb_000077_050 Hb_001504_160 Hb_001504_160 Hb_041091_010--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_041091_010--Hb_000076_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4647 1.69799 2.55361 2.88467 18.231 36.7506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.62833 8.98754 13.8092 7.14381 4.16587

CAGE analysis