Hb_041091_010

Information

Type -
Description -
Location Contig41091: 616-3139
Sequence    

Annotation

kegg
ID pmum:103328309
description pentatricopeptide repeat-containing protein At1g05670, mitochondrial
nr
ID XP_012091977.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
swissprot
ID Q0WVK7
description Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1
trembl
ID A0A067JBV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40687: 1285-1622 , PASA_asmbl_40688: 1916-3109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041091_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
2 Hb_001584_110 0.0765610604 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
3 Hb_000803_150 0.0772215796 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
4 Hb_001871_040 0.0775332434 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
5 Hb_000077_050 0.0809103826 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_001504_160 0.0815585352 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
7 Hb_000076_080 0.0823135999 - - PREDICTED: protein MOS2 [Jatropha curcas]
8 Hb_000230_330 0.0844156867 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
9 Hb_004048_090 0.0850018814 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
10 Hb_185467_020 0.0858187072 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_002874_070 0.0877186913 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
12 Hb_024714_020 0.0918663428 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000016_110 0.0919490126 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
14 Hb_000462_150 0.0924746041 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
15 Hb_004724_360 0.0926305268 - - OTU-like cysteine protease family protein [Populus trichocarpa]
16 Hb_123777_030 0.0933970721 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
17 Hb_000390_060 0.09382998 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
18 Hb_004055_040 0.0951998198 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
19 Hb_002928_060 0.0959017668 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
20 Hb_014568_030 0.0964533958 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]

Gene co-expression network

sample Hb_041091_010 Hb_041091_010 Hb_001584_110 Hb_001584_110 Hb_041091_010--Hb_001584_110 Hb_000803_150 Hb_000803_150 Hb_041091_010--Hb_000803_150 Hb_001871_040 Hb_001871_040 Hb_041091_010--Hb_001871_040 Hb_000077_050 Hb_000077_050 Hb_041091_010--Hb_000077_050 Hb_001504_160 Hb_001504_160 Hb_041091_010--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_041091_010--Hb_000076_080 Hb_000230_330 Hb_000230_330 Hb_001584_110--Hb_000230_330 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_000390_060 Hb_000390_060 Hb_001584_110--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_001584_110--Hb_000462_150 Hb_001214_130 Hb_001214_130 Hb_000803_150--Hb_001214_130 Hb_000162_090 Hb_000162_090 Hb_000803_150--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_003642_060 Hb_003642_060 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004055_040 Hb_004055_040 Hb_001871_040--Hb_004055_040 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_000077_050--Hb_014568_030 Hb_000077_050--Hb_001584_110 Hb_003434_060 Hb_003434_060 Hb_000077_050--Hb_003434_060 Hb_000077_050--Hb_000390_060 Hb_000077_050--Hb_000230_330 Hb_000077_050--Hb_000462_150 Hb_001504_160--Hb_000076_080 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000076_080--Hb_004724_360 Hb_000684_420 Hb_000684_420 Hb_000076_080--Hb_000684_420 Hb_002097_090 Hb_002097_090 Hb_000076_080--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000076_080--Hb_002400_180 Hb_000186_280 Hb_000186_280 Hb_000076_080--Hb_000186_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56659 1.20019 0.601923 0.641349 3.73146 5.35818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37472 1.70333 2.582 1.10211 0.958065

CAGE analysis