Hb_000347_340

Information

Type -
Description -
Location Contig347: 348223-348904
Sequence    

Annotation

kegg
ID rcu:RCOM_0083800
description ring finger, putative
nr
ID XP_002534469.1
description ring finger, putative [Ricinus communis]
swissprot
ID Q940X7
description RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1
trembl
ID B9T8A0
description Ring finger, putative OS=Ricinus communis GN=RCOM_0083800 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-box protein 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36228: 342774-348873
cDNA
(Sanger)
(ID:Location)		 016_P16.ab1: 342906-348873

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_340 0.0 - - ring finger, putative [Ricinus communis]
2 Hb_000771_100 0.0798317594 - - Os06g0527300 [Oryza sativa Japonica Group]
3 Hb_000510_090 0.1022982152 - - 40S ribosomal protein S15 [Morus notabilis]
4 Hb_004724_100 0.110871553 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
5 Hb_102156_010 0.1110592139 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002272_260 0.1134904013 - - -
7 Hb_000620_080 0.1138916431 - - hypothetical protein F775_32679 [Aegilops tauschii]
8 Hb_004374_200 0.1167264138 - - putative GMP synthase [Oxybasis rubra]
9 Hb_001269_320 0.1177483683 - - 40S ribosomal protein S12A [Hevea brasiliensis]
10 Hb_006909_030 0.1181162167 - - 40S ribosomal protein S17B [Hevea brasiliensis]
11 Hb_155375_010 0.1191039948 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
12 Hb_003874_020 0.1198072368 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
13 Hb_000500_060 0.1213451345 - - BnaC08g21190D [Brassica napus]
14 Hb_004657_020 0.1219014046 - - rer1 protein, putative [Ricinus communis]
15 Hb_000032_540 0.1224661623 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
16 Hb_004128_190 0.1226780717 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
17 Hb_000684_230 0.124079457 - - 40S ribosomal protein S23, putative [Ricinus communis]
18 Hb_086703_010 0.1246204886 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
19 Hb_141131_010 0.1251075899 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
20 Hb_001124_210 0.125393651 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000347_340 Hb_000347_340 Hb_000771_100 Hb_000771_100 Hb_000347_340--Hb_000771_100 Hb_000510_090 Hb_000510_090 Hb_000347_340--Hb_000510_090 Hb_004724_100 Hb_004724_100 Hb_000347_340--Hb_004724_100 Hb_102156_010 Hb_102156_010 Hb_000347_340--Hb_102156_010 Hb_002272_260 Hb_002272_260 Hb_000347_340--Hb_002272_260 Hb_000620_080 Hb_000620_080 Hb_000347_340--Hb_000620_080 Hb_000771_100--Hb_002272_260 Hb_000155_180 Hb_000155_180 Hb_000771_100--Hb_000155_180 Hb_086703_010 Hb_086703_010 Hb_000771_100--Hb_086703_010 Hb_000771_100--Hb_000620_080 Hb_000676_290 Hb_000676_290 Hb_000771_100--Hb_000676_290 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_155375_010 Hb_155375_010 Hb_000510_090--Hb_155375_010 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_003874_020 Hb_003874_020 Hb_004724_100--Hb_003874_020 Hb_000371_080 Hb_000371_080 Hb_004724_100--Hb_000371_080 Hb_000175_070 Hb_000175_070 Hb_004724_100--Hb_000175_070 Hb_024650_050 Hb_024650_050 Hb_004724_100--Hb_024650_050 Hb_000200_210 Hb_000200_210 Hb_004724_100--Hb_000200_210 Hb_002259_150 Hb_002259_150 Hb_102156_010--Hb_002259_150 Hb_000175_400 Hb_000175_400 Hb_102156_010--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_102156_010--Hb_000193_350 Hb_000032_540 Hb_000032_540 Hb_102156_010--Hb_000032_540 Hb_102156_010--Hb_002272_260 Hb_004453_150 Hb_004453_150 Hb_102156_010--Hb_004453_150 Hb_002272_260--Hb_004453_150 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_002272_260--Hb_002259_150 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_000620_080--Hb_141131_010 Hb_004128_190 Hb_004128_190 Hb_000620_080--Hb_004128_190 Hb_001454_140 Hb_001454_140 Hb_000620_080--Hb_001454_140 Hb_004374_200 Hb_004374_200 Hb_000620_080--Hb_004374_200 Hb_001124_210 Hb_001124_210 Hb_000620_080--Hb_001124_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
179.983 56.031 21.4407 123.97 84.9685 291.573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
214.697 253.211 98.609 82.7129 15.9715

CAGE analysis