Hb_004109_060

Information

Type -
Description -
Location Contig4109: 62213-62488
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12520g
description hypothetical protein
nr
ID XP_006371507.1
description hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FGB9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12520g PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein fam133-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_060 0.0 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
2 Hb_002253_040 0.092479958 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
3 Hb_017259_010 0.1034960066 - - -
4 Hb_009838_130 0.1125738769 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
5 Hb_001754_170 0.1138404215 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
6 Hb_000107_170 0.1145958807 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
7 Hb_001616_090 0.1151448005 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
8 Hb_010298_020 0.1161759463 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
9 Hb_000116_110 0.1172232905 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
10 Hb_031091_010 0.1185935876 - - crooked neck protein, putative [Ricinus communis]
11 Hb_007643_050 0.1213027713 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001720_010 0.1225680136 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_000264_060 0.1229875211 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
14 Hb_000521_020 0.1231229129 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
15 Hb_175612_010 0.124329826 transcription factor TF Family: MBF1 orf [Ricinus communis]
16 Hb_000236_300 0.1272841973 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
17 Hb_012799_110 0.1274126765 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
18 Hb_001288_080 0.1281259905 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
19 Hb_171554_090 0.1291463777 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
20 Hb_001829_010 0.1293710034 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_060 Hb_004109_060 Hb_002253_040 Hb_002253_040 Hb_004109_060--Hb_002253_040 Hb_017259_010 Hb_017259_010 Hb_004109_060--Hb_017259_010 Hb_009838_130 Hb_009838_130 Hb_004109_060--Hb_009838_130 Hb_001754_170 Hb_001754_170 Hb_004109_060--Hb_001754_170 Hb_000107_170 Hb_000107_170 Hb_004109_060--Hb_000107_170 Hb_001616_090 Hb_001616_090 Hb_004109_060--Hb_001616_090 Hb_001818_080 Hb_001818_080 Hb_002253_040--Hb_001818_080 Hb_001158_220 Hb_001158_220 Hb_002253_040--Hb_001158_220 Hb_031091_010 Hb_031091_010 Hb_002253_040--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_002253_040--Hb_007643_050 Hb_000116_110 Hb_000116_110 Hb_002253_040--Hb_000116_110 Hb_017259_010--Hb_009838_130 Hb_017259_010--Hb_001158_220 Hb_017259_010--Hb_007643_050 Hb_025236_040 Hb_025236_040 Hb_017259_010--Hb_025236_040 Hb_004447_030 Hb_004447_030 Hb_017259_010--Hb_004447_030 Hb_000529_080 Hb_000529_080 Hb_017259_010--Hb_000529_080 Hb_002411_180 Hb_002411_180 Hb_009838_130--Hb_002411_180 Hb_008518_050 Hb_008518_050 Hb_009838_130--Hb_008518_050 Hb_004374_150 Hb_004374_150 Hb_009838_130--Hb_004374_150 Hb_009838_130--Hb_000529_080 Hb_009838_130--Hb_007643_050 Hb_007534_040 Hb_007534_040 Hb_001754_170--Hb_007534_040 Hb_001754_170--Hb_004374_150 Hb_000236_300 Hb_000236_300 Hb_001754_170--Hb_000236_300 Hb_175612_010 Hb_175612_010 Hb_001754_170--Hb_175612_010 Hb_001754_170--Hb_000107_170 Hb_000617_220 Hb_000617_220 Hb_001754_170--Hb_000617_220 Hb_003091_010 Hb_003091_010 Hb_000107_170--Hb_003091_010 Hb_000359_330 Hb_000359_330 Hb_000107_170--Hb_000359_330 Hb_001474_030 Hb_001474_030 Hb_000107_170--Hb_001474_030 Hb_000014_170 Hb_000014_170 Hb_000107_170--Hb_000014_170 Hb_000107_170--Hb_000617_220 Hb_000186_280 Hb_000186_280 Hb_001616_090--Hb_000186_280 Hb_009411_020 Hb_009411_020 Hb_001616_090--Hb_009411_020 Hb_001616_090--Hb_031091_010 Hb_001616_090--Hb_007643_050 Hb_000684_420 Hb_000684_420 Hb_001616_090--Hb_000684_420 Hb_173178_020 Hb_173178_020 Hb_001616_090--Hb_173178_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.785 47.5615 17.0356 19.729 62.0949 92.6987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.7432 52.7118 11.002 9.97707 7.02129

CAGE analysis