Hb_001754_170

Information

Type -
Description -
Location Contig1754: 129283-130465
Sequence    

Annotation

kegg
ID rcu:RCOM_0680810
description 60S ribosome subunit biogenesis protein NIP7, putative
nr
ID XP_012083920.1
description PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
swissprot
ID Q6DFH9
description 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1
trembl
ID A0A067K7K4
description 60S ribosome subunit biogenesis protein NIP7 homolog OS=Jatropha curcas GN=JCGZ_18864 PE=3 SV=1
Gene Ontology
ID GO:0003723
description 60s ribosome subunit biogenesis protein nip7 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_170 0.0 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
2 Hb_007534_040 0.0906530015 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
3 Hb_004374_150 0.0932803329 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
4 Hb_000236_300 0.1027671676 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
5 Hb_175612_010 0.1046258207 transcription factor TF Family: MBF1 orf [Ricinus communis]
6 Hb_000107_170 0.1090747514 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
7 Hb_000617_220 0.1115172661 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
8 Hb_004109_060 0.1138404215 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
9 Hb_000640_020 0.1142589377 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
10 Hb_023020_060 0.1158839277 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
11 Hb_000236_280 0.1165597495 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
12 Hb_004525_100 0.1182485737 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
13 Hb_001474_030 0.1202692221 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
14 Hb_003581_110 0.120368731 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
15 Hb_002133_030 0.1209153393 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
16 Hb_000264_060 0.1224535362 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
17 Hb_012753_020 0.1225042926 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004044_020 0.1229445306 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
19 Hb_179511_010 0.1233879431 - - -
20 Hb_003091_010 0.1244401724 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]

Gene co-expression network

sample Hb_001754_170 Hb_001754_170 Hb_007534_040 Hb_007534_040 Hb_001754_170--Hb_007534_040 Hb_004374_150 Hb_004374_150 Hb_001754_170--Hb_004374_150 Hb_000236_300 Hb_000236_300 Hb_001754_170--Hb_000236_300 Hb_175612_010 Hb_175612_010 Hb_001754_170--Hb_175612_010 Hb_000107_170 Hb_000107_170 Hb_001754_170--Hb_000107_170 Hb_000617_220 Hb_000617_220 Hb_001754_170--Hb_000617_220 Hb_007534_040--Hb_175612_010 Hb_000035_400 Hb_000035_400 Hb_007534_040--Hb_000035_400 Hb_000209_090 Hb_000209_090 Hb_007534_040--Hb_000209_090 Hb_000175_390 Hb_000175_390 Hb_007534_040--Hb_000175_390 Hb_000732_020 Hb_000732_020 Hb_007534_040--Hb_000732_020 Hb_004701_030 Hb_004701_030 Hb_004374_150--Hb_004701_030 Hb_073171_080 Hb_073171_080 Hb_004374_150--Hb_073171_080 Hb_023020_060 Hb_023020_060 Hb_004374_150--Hb_023020_060 Hb_001396_290 Hb_001396_290 Hb_004374_150--Hb_001396_290 Hb_023001_020 Hb_023001_020 Hb_004374_150--Hb_023001_020 Hb_001474_030 Hb_001474_030 Hb_004374_150--Hb_001474_030 Hb_000236_300--Hb_000209_090 Hb_000236_300--Hb_175612_010 Hb_004204_200 Hb_004204_200 Hb_000236_300--Hb_004204_200 Hb_000236_300--Hb_007534_040 Hb_005735_030 Hb_005735_030 Hb_000236_300--Hb_005735_030 Hb_175612_010--Hb_000617_220 Hb_175612_010--Hb_000175_390 Hb_004447_030 Hb_004447_030 Hb_175612_010--Hb_004447_030 Hb_000156_140 Hb_000156_140 Hb_175612_010--Hb_000156_140 Hb_003091_010 Hb_003091_010 Hb_000107_170--Hb_003091_010 Hb_000359_330 Hb_000359_330 Hb_000107_170--Hb_000359_330 Hb_000107_170--Hb_001474_030 Hb_000014_170 Hb_000014_170 Hb_000107_170--Hb_000014_170 Hb_000107_170--Hb_000617_220 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.9539 17.8528 6.83168 8.48818 47.1251 36.8524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9523 22.1374 4.90977 7.83926 3.23854

CAGE analysis