Hb_001818_080

Information

Type -
Description -
Location Contig1818: 86249-92948
Sequence    

Annotation

kegg
ID rcu:RCOM_0041310
description ubiquitin-protein ligase, putative
nr
ID XP_012090838.1
description PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
swissprot
ID Q8LB33
description F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2 SV=1
trembl
ID A0A067JDI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03035 PE=4 SV=1
Gene Ontology
ID GO:0005829
description f-box protein at3g58530 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17693: 88053-92923 , PASA_asmbl_17694: 86276-92917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001818_080 0.0 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
2 Hb_030312_040 0.0897285813 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
3 Hb_061908_010 0.0964014707 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
4 Hb_002232_170 0.0984590161 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
5 Hb_004374_200 0.0997516279 - - putative GMP synthase [Oxybasis rubra]
6 Hb_005565_030 0.1010221177 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
7 Hb_015941_030 0.1011919711 - - unknown [Populus trichocarpa]
8 Hb_123475_010 0.1012880395 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
9 Hb_000510_090 0.1026852399 - - 40S ribosomal protein S15 [Morus notabilis]
10 Hb_000116_110 0.1028070606 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
11 Hb_002253_040 0.1034070838 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
12 Hb_000866_030 0.1059847277 - - hypothetical protein RCOM_1615820 [Ricinus communis]
13 Hb_005489_130 0.1061331308 - - calmodulin, putative [Ricinus communis]
14 Hb_000442_100 0.1064069311 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
15 Hb_001158_220 0.1066052499 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
16 Hb_000997_060 0.1067569349 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
17 Hb_143947_010 0.1082860243 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
18 Hb_000808_040 0.1088444226 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
19 Hb_000236_370 0.1089898822 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
20 Hb_001124_210 0.1092731311 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001818_080 Hb_001818_080 Hb_030312_040 Hb_030312_040 Hb_001818_080--Hb_030312_040 Hb_061908_010 Hb_061908_010 Hb_001818_080--Hb_061908_010 Hb_002232_170 Hb_002232_170 Hb_001818_080--Hb_002232_170 Hb_004374_200 Hb_004374_200 Hb_001818_080--Hb_004374_200 Hb_005565_030 Hb_005565_030 Hb_001818_080--Hb_005565_030 Hb_015941_030 Hb_015941_030 Hb_001818_080--Hb_015941_030 Hb_006452_030 Hb_006452_030 Hb_030312_040--Hb_006452_030 Hb_000703_080 Hb_000703_080 Hb_030312_040--Hb_000703_080 Hb_002263_010 Hb_002263_010 Hb_030312_040--Hb_002263_010 Hb_003494_240 Hb_003494_240 Hb_030312_040--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_030312_040--Hb_000608_120 Hb_008725_250 Hb_008725_250 Hb_030312_040--Hb_008725_250 Hb_123475_010 Hb_123475_010 Hb_061908_010--Hb_123475_010 Hb_000956_030 Hb_000956_030 Hb_061908_010--Hb_000956_030 Hb_001158_220 Hb_001158_220 Hb_061908_010--Hb_001158_220 Hb_000120_500 Hb_000120_500 Hb_061908_010--Hb_000120_500 Hb_002475_160 Hb_002475_160 Hb_061908_010--Hb_002475_160 Hb_001009_040 Hb_001009_040 Hb_061908_010--Hb_001009_040 Hb_007101_100 Hb_007101_100 Hb_002232_170--Hb_007101_100 Hb_002232_170--Hb_015941_030 Hb_000997_060 Hb_000997_060 Hb_002232_170--Hb_000997_060 Hb_000169_010 Hb_000169_010 Hb_002232_170--Hb_000169_010 Hb_002374_160 Hb_002374_160 Hb_002232_170--Hb_002374_160 Hb_000808_040 Hb_000808_040 Hb_002232_170--Hb_000808_040 Hb_004374_200--Hb_007101_100 Hb_001454_140 Hb_001454_140 Hb_004374_200--Hb_001454_140 Hb_005686_110 Hb_005686_110 Hb_004374_200--Hb_005686_110 Hb_004374_200--Hb_002374_160 Hb_000620_080 Hb_000620_080 Hb_004374_200--Hb_000620_080 Hb_001124_210 Hb_001124_210 Hb_004374_200--Hb_001124_210 Hb_009158_030 Hb_009158_030 Hb_005565_030--Hb_009158_030 Hb_005565_030--Hb_030312_040 Hb_002111_030 Hb_002111_030 Hb_005565_030--Hb_002111_030 Hb_005565_030--Hb_002263_010 Hb_005565_030--Hb_015941_030 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_015941_030--Hb_000808_040 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_015941_030--Hb_002475_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.5158 32.8652 10.5356 19.5019 39.2916 94.9712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.7271 46.6871 24.2295 20.7203 5.04473

CAGE analysis