Hb_002263_010

Information

Type -
Description -
Location Contig2263: 22182-33486
Sequence    

Annotation

kegg
ID cit:102612180
description serine/threonine-protein phosphatase PP2A-3 catalytic subunit-like
nr
ID XP_006429941.1
description hypothetical protein CICLE_v10012259mg [Citrus clementina]
swissprot
ID P48578
description Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1
trembl
ID A0A067FTW6
description Serine/threonine-protein phosphatase OS=Citrus sinensis GN=CISIN_1g021077mg PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp2a catalytic subunit isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23519: 27469-27965 , PASA_asmbl_23520: 22053-33476
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002263_010 0.0 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
2 Hb_006452_030 0.0775833426 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_030312_040 0.0824586394 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
4 Hb_003086_020 0.0927530991 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
5 Hb_004242_100 0.1008576579 - - RNA binding protein, putative [Ricinus communis]
6 Hb_000152_140 0.1065152902 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
7 Hb_001454_140 0.1119923782 - - protein arginine n-methyltransferase, putative [Ricinus communis]
8 Hb_004221_010 0.1123851721 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
9 Hb_000395_080 0.1131360227 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
10 Hb_084934_010 0.1134181377 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
11 Hb_000442_100 0.1138727586 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
12 Hb_003494_240 0.1141548678 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
13 Hb_003086_110 0.1146934686 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
14 Hb_033491_010 0.1148902211 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
15 Hb_000705_260 0.115399782 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007101_100 0.1164711456 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
17 Hb_000272_100 0.117002357 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
18 Hb_004374_200 0.1181988626 - - putative GMP synthase [Oxybasis rubra]
19 Hb_001369_060 0.1185094476 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
20 Hb_000984_190 0.1189598764 - - -

Gene co-expression network

sample Hb_002263_010 Hb_002263_010 Hb_006452_030 Hb_006452_030 Hb_002263_010--Hb_006452_030 Hb_030312_040 Hb_030312_040 Hb_002263_010--Hb_030312_040 Hb_003086_020 Hb_003086_020 Hb_002263_010--Hb_003086_020 Hb_004242_100 Hb_004242_100 Hb_002263_010--Hb_004242_100 Hb_000152_140 Hb_000152_140 Hb_002263_010--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002263_010--Hb_001454_140 Hb_006452_030--Hb_030312_040 Hb_004221_010 Hb_004221_010 Hb_006452_030--Hb_004221_010 Hb_003494_240 Hb_003494_240 Hb_006452_030--Hb_003494_240 Hb_005324_010 Hb_005324_010 Hb_006452_030--Hb_005324_010 Hb_001047_020 Hb_001047_020 Hb_006452_030--Hb_001047_020 Hb_000703_080 Hb_000703_080 Hb_030312_040--Hb_000703_080 Hb_030312_040--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_030312_040--Hb_000608_120 Hb_008725_250 Hb_008725_250 Hb_030312_040--Hb_008725_250 Hb_003086_110 Hb_003086_110 Hb_003086_020--Hb_003086_110 Hb_003086_020--Hb_000152_140 Hb_133271_020 Hb_133271_020 Hb_003086_020--Hb_133271_020 Hb_000272_100 Hb_000272_100 Hb_003086_020--Hb_000272_100 Hb_004662_030 Hb_004662_030 Hb_003086_020--Hb_004662_030 Hb_157854_010 Hb_157854_010 Hb_003086_020--Hb_157854_010 Hb_004072_010 Hb_004072_010 Hb_004242_100--Hb_004072_010 Hb_005941_010 Hb_005941_010 Hb_004242_100--Hb_005941_010 Hb_005245_090 Hb_005245_090 Hb_004242_100--Hb_005245_090 Hb_003050_040 Hb_003050_040 Hb_004242_100--Hb_003050_040 Hb_000705_260 Hb_000705_260 Hb_004242_100--Hb_000705_260 Hb_002686_270 Hb_002686_270 Hb_000152_140--Hb_002686_270 Hb_002025_320 Hb_002025_320 Hb_000152_140--Hb_002025_320 Hb_000700_090 Hb_000700_090 Hb_000152_140--Hb_000700_090 Hb_000696_110 Hb_000696_110 Hb_000152_140--Hb_000696_110 Hb_000152_140--Hb_005941_010 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_002374_160 Hb_002374_160 Hb_001454_140--Hb_002374_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.912 53.309 8.49224 20.2047 79.9677 183.161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
178.782 79.2429 83.036 52.0447 10.5395

CAGE analysis