Hb_000705_260

Information

Type -
Description -
Location Contig705: 144939-149273
Sequence    

Annotation

kegg
ID rcu:RCOM_0732590
description hypothetical protein
nr
ID XP_002520502.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3D3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0732590 PE=4 SV=1
Gene Ontology
ID GO:0005622
description web family protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55085: 145008-149218 , PASA_asmbl_55086: 147784-149218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009558_020 0.094243662 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
3 Hb_004242_100 0.1013832503 - - RNA binding protein, putative [Ricinus communis]
4 Hb_000984_190 0.1027796677 - - -
5 Hb_001329_230 0.1053883269 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
6 Hb_003602_040 0.1065074372 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_006788_070 0.1066046472 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
8 Hb_003086_110 0.1078554078 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
9 Hb_003086_020 0.1090575867 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
10 Hb_003453_010 0.1102430741 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005941_010 0.1113631873 - - PREDICTED: protein SAND [Jatropha curcas]
12 Hb_010261_020 0.1115614734 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
13 Hb_003050_040 0.1134357302 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
14 Hb_000186_010 0.1138799778 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
15 Hb_002759_250 0.1141634145 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
16 Hb_000997_060 0.1142412423 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
17 Hb_007101_100 0.1152777458 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
18 Hb_002263_010 0.115399782 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
19 Hb_001047_010 0.1162881822 - - conserved hypothetical protein [Ricinus communis]
20 Hb_022137_060 0.1166372001 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]

Gene co-expression network

sample Hb_000705_260 Hb_000705_260 Hb_009558_020 Hb_009558_020 Hb_000705_260--Hb_009558_020 Hb_004242_100 Hb_004242_100 Hb_000705_260--Hb_004242_100 Hb_000984_190 Hb_000984_190 Hb_000705_260--Hb_000984_190 Hb_001329_230 Hb_001329_230 Hb_000705_260--Hb_001329_230 Hb_003602_040 Hb_003602_040 Hb_000705_260--Hb_003602_040 Hb_006788_070 Hb_006788_070 Hb_000705_260--Hb_006788_070 Hb_000175_070 Hb_000175_070 Hb_009558_020--Hb_000175_070 Hb_009558_020--Hb_006788_070 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_009558_020--Hb_007193_100 Hb_004072_010 Hb_004072_010 Hb_004242_100--Hb_004072_010 Hb_005941_010 Hb_005941_010 Hb_004242_100--Hb_005941_010 Hb_005245_090 Hb_005245_090 Hb_004242_100--Hb_005245_090 Hb_003050_040 Hb_003050_040 Hb_004242_100--Hb_003050_040 Hb_002263_010 Hb_002263_010 Hb_004242_100--Hb_002263_010 Hb_001235_070 Hb_001235_070 Hb_000984_190--Hb_001235_070 Hb_000984_190--Hb_005941_010 Hb_003453_010 Hb_003453_010 Hb_000984_190--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_000984_190--Hb_001437_040 Hb_017895_050 Hb_017895_050 Hb_000984_190--Hb_017895_050 Hb_003086_020 Hb_003086_020 Hb_000984_190--Hb_003086_020 Hb_001329_230--Hb_003602_040 Hb_006663_100 Hb_006663_100 Hb_001329_230--Hb_006663_100 Hb_009775_050 Hb_009775_050 Hb_001329_230--Hb_009775_050 Hb_076787_010 Hb_076787_010 Hb_001329_230--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_001329_230--Hb_022137_060 Hb_009118_010 Hb_009118_010 Hb_001329_230--Hb_009118_010 Hb_012760_170 Hb_012760_170 Hb_003602_040--Hb_012760_170 Hb_003602_040--Hb_009118_010 Hb_000012_090 Hb_000012_090 Hb_003602_040--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_003602_040--Hb_006663_100 Hb_006788_070--Hb_000175_070 Hb_000023_140 Hb_000023_140 Hb_006788_070--Hb_000023_140 Hb_011310_070 Hb_011310_070 Hb_006788_070--Hb_011310_070 Hb_005063_040 Hb_005063_040 Hb_006788_070--Hb_005063_040 Hb_006788_070--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.8968 7.23426 4.93963 11.3977 37.7533 80.5115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.6469 32.7775 29.5618 25.3331 10.0872

CAGE analysis