Hb_002111_030

Information

Type -
Description -
Location Contig2111: 33247-39630
Sequence    

Annotation

kegg
ID rcu:RCOM_0934400
description NEDD8 ultimate buster, putative
nr
ID XP_012081134.1
description PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
swissprot
ID P54729
description NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE=1 SV=2
trembl
ID A0A067KDB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16987 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21886: 33347-39591 , PASA_asmbl_21887: 36950-37105 , PASA_asmbl_21889: 33330-36898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002111_030 0.0 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
2 Hb_002475_160 0.0827791876 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
3 Hb_000300_280 0.0835860395 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
4 Hb_026099_010 0.0924370793 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
5 Hb_000645_150 0.0925593763 - - zinc finger protein, putative [Ricinus communis]
6 Hb_002942_160 0.0934759348 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
7 Hb_007317_190 0.0940159053 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
8 Hb_004108_140 0.0960516136 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
9 Hb_061908_010 0.0993851271 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
10 Hb_007590_080 0.0998656115 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
11 Hb_000879_140 0.1005547315 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
12 Hb_002232_170 0.1005922937 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
13 Hb_002097_090 0.1010514811 - - Splicing factor 3A subunit, putative [Ricinus communis]
14 Hb_004310_060 0.1027768533 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_006913_040 0.1030081728 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
16 Hb_000370_030 0.1036449855 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
17 Hb_010931_080 0.1042021293 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
18 Hb_002820_040 0.1043235605 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000373_270 0.1059188765 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
20 Hb_000703_080 0.1074705363 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]

Gene co-expression network

sample Hb_002111_030 Hb_002111_030 Hb_002475_160 Hb_002475_160 Hb_002111_030--Hb_002475_160 Hb_000300_280 Hb_000300_280 Hb_002111_030--Hb_000300_280 Hb_026099_010 Hb_026099_010 Hb_002111_030--Hb_026099_010 Hb_000645_150 Hb_000645_150 Hb_002111_030--Hb_000645_150 Hb_002942_160 Hb_002942_160 Hb_002111_030--Hb_002942_160 Hb_007317_190 Hb_007317_190 Hb_002111_030--Hb_007317_190 Hb_007336_020 Hb_007336_020 Hb_002475_160--Hb_007336_020 Hb_007643_050 Hb_007643_050 Hb_002475_160--Hb_007643_050 Hb_007590_080 Hb_007590_080 Hb_002475_160--Hb_007590_080 Hb_001158_220 Hb_001158_220 Hb_002475_160--Hb_001158_220 Hb_002475_160--Hb_000645_150 Hb_011942_080 Hb_011942_080 Hb_002475_160--Hb_011942_080 Hb_004310_060 Hb_004310_060 Hb_000300_280--Hb_004310_060 Hb_000879_140 Hb_000879_140 Hb_000300_280--Hb_000879_140 Hb_000370_030 Hb_000370_030 Hb_000300_280--Hb_000370_030 Hb_003728_030 Hb_003728_030 Hb_000300_280--Hb_003728_030 Hb_000184_130 Hb_000184_130 Hb_000300_280--Hb_000184_130 Hb_000373_270 Hb_000373_270 Hb_000300_280--Hb_000373_270 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_002044_060 Hb_002044_060 Hb_026099_010--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_026099_010--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_026099_010--Hb_000789_080 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_002097_090 Hb_002097_090 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_010931_080 Hb_010931_080 Hb_002942_160--Hb_010931_080 Hb_002942_160--Hb_002044_060 Hb_002942_160--Hb_004370_030 Hb_002942_160--Hb_000789_080 Hb_000364_080 Hb_000364_080 Hb_002942_160--Hb_000364_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120 Hb_000568_040 Hb_000568_040 Hb_007317_190--Hb_000568_040 Hb_007317_190--Hb_006913_040 Hb_007317_190--Hb_004108_140 Hb_002232_170 Hb_002232_170 Hb_007317_190--Hb_002232_170 Hb_000522_090 Hb_000522_090 Hb_007317_190--Hb_000522_090 Hb_016657_010 Hb_016657_010 Hb_007317_190--Hb_016657_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.7601 45.859 11.7643 18.1538 65.841 97.3242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.4395 33.8133 22.8854 35.1301 19.3364

CAGE analysis