Hb_007778_020

Information

Type -
Description -
Location Contig7778: 43863-47440
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57867: 44077-49280 , PASA_asmbl_57870: 48272-49275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007778_020 0.0 - - -
2 Hb_000175_090 0.1463878607 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000504_170 0.149876047 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
4 Hb_000258_320 0.1545907082 - - -
5 Hb_014720_170 0.156340222 - - glutaredoxin-1, grx1, putative [Ricinus communis]
6 Hb_007083_010 0.1591904756 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
7 Hb_003297_010 0.1602632036 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
8 Hb_036227_010 0.1663399245 - - -
9 Hb_121729_020 0.1747672508 - - DNA binding protein, putative [Ricinus communis]
10 Hb_007123_070 0.1773877344 - - -
11 Hb_007416_200 0.1824291065 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
12 Hb_141532_010 0.1890699898 - - PREDICTED: protein SMG9-like [Jatropha curcas]
13 Hb_001828_200 0.1904580763 - - ribosomal protein L13 [Populus trichocarpa]
14 Hb_188209_010 0.1924864026 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
15 Hb_001427_050 0.1927179409 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
16 Hb_002292_010 0.1929273033 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
17 Hb_092337_020 0.1929775437 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
18 Hb_001135_020 0.1939468018 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
19 Hb_003813_200 0.1956000961 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_001195_570 0.1967504402 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]

Gene co-expression network

sample Hb_007778_020 Hb_007778_020 Hb_000175_090 Hb_000175_090 Hb_007778_020--Hb_000175_090 Hb_000504_170 Hb_000504_170 Hb_007778_020--Hb_000504_170 Hb_000258_320 Hb_000258_320 Hb_007778_020--Hb_000258_320 Hb_014720_170 Hb_014720_170 Hb_007778_020--Hb_014720_170 Hb_007083_010 Hb_007083_010 Hb_007778_020--Hb_007083_010 Hb_003297_010 Hb_003297_010 Hb_007778_020--Hb_003297_010 Hb_141532_010 Hb_141532_010 Hb_000175_090--Hb_141532_010 Hb_004363_010 Hb_004363_010 Hb_000175_090--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_000175_090--Hb_000976_260 Hb_012114_060 Hb_012114_060 Hb_000175_090--Hb_012114_060 Hb_002292_010 Hb_002292_010 Hb_000175_090--Hb_002292_010 Hb_000261_250 Hb_000261_250 Hb_000175_090--Hb_000261_250 Hb_001922_130 Hb_001922_130 Hb_000504_170--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_000504_170--Hb_000186_260 Hb_009178_020 Hb_009178_020 Hb_000504_170--Hb_009178_020 Hb_000504_170--Hb_007083_010 Hb_121729_020 Hb_121729_020 Hb_000504_170--Hb_121729_020 Hb_007416_200 Hb_007416_200 Hb_000504_170--Hb_007416_200 Hb_000169_190 Hb_000169_190 Hb_000258_320--Hb_000169_190 Hb_035318_010 Hb_035318_010 Hb_000258_320--Hb_035318_010 Hb_000258_320--Hb_000504_170 Hb_000258_320--Hb_007083_010 Hb_000258_320--Hb_014720_170 Hb_000996_180 Hb_000996_180 Hb_000258_320--Hb_000996_180 Hb_014720_170--Hb_007083_010 Hb_001135_020 Hb_001135_020 Hb_014720_170--Hb_001135_020 Hb_001828_200 Hb_001828_200 Hb_014720_170--Hb_001828_200 Hb_014720_170--Hb_002292_010 Hb_002026_140 Hb_002026_140 Hb_014720_170--Hb_002026_140 Hb_014720_170--Hb_000504_170 Hb_027472_210 Hb_027472_210 Hb_007083_010--Hb_027472_210 Hb_002043_090 Hb_002043_090 Hb_007083_010--Hb_002043_090 Hb_007083_010--Hb_002026_140 Hb_001427_050 Hb_001427_050 Hb_007083_010--Hb_001427_050 Hb_003297_010--Hb_000175_090 Hb_087762_010 Hb_087762_010 Hb_003297_010--Hb_087762_010 Hb_003297_010--Hb_012114_060 Hb_007558_010 Hb_007558_010 Hb_003297_010--Hb_007558_010 Hb_004137_030 Hb_004137_030 Hb_003297_010--Hb_004137_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1421 15.7817 14.5097 2.99484 12.3265 15.689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4131 16.1925 1.0574 1.00828 1.16011

CAGE analysis