Hb_003297_010

Information

Type -
Description -
Location Contig3297: 9226-10185
Sequence    

Annotation

kegg
ID rcu:RCOM_0724580
description hypothetical protein
nr
ID XP_012075446.1
description PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10714 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003297_010 0.0 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
2 Hb_000175_090 0.1478926561 - - conserved hypothetical protein [Ricinus communis]
3 Hb_087762_010 0.1547771332 - - thioredoxin-like family protein [Hevea brasiliensis]
4 Hb_012114_060 0.15731219 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
5 Hb_007778_020 0.1602632036 - - -
6 Hb_007558_010 0.1615955022 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
7 Hb_004137_030 0.1619251413 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001504_070 0.1620171494 - - PREDICTED: 60S ribosomal protein L7-1 [Jatropha curcas]
9 Hb_005511_100 0.1671285675 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
10 Hb_141532_010 0.1743303733 - - PREDICTED: protein SMG9-like [Jatropha curcas]
11 Hb_003467_010 0.1759125753 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
12 Hb_000742_210 0.1805963816 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_003598_040 0.1816932346 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
14 Hb_001105_010 0.1826457289 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
15 Hb_000787_170 0.1830098535 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
16 Hb_001898_230 0.1831811366 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
17 Hb_002157_190 0.1841020833 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
18 Hb_017469_020 0.1841811962 - - -
19 Hb_000193_150 0.1841981673 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
20 Hb_000394_190 0.1847452658 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003297_010 Hb_003297_010 Hb_000175_090 Hb_000175_090 Hb_003297_010--Hb_000175_090 Hb_087762_010 Hb_087762_010 Hb_003297_010--Hb_087762_010 Hb_012114_060 Hb_012114_060 Hb_003297_010--Hb_012114_060 Hb_007778_020 Hb_007778_020 Hb_003297_010--Hb_007778_020 Hb_007558_010 Hb_007558_010 Hb_003297_010--Hb_007558_010 Hb_004137_030 Hb_004137_030 Hb_003297_010--Hb_004137_030 Hb_141532_010 Hb_141532_010 Hb_000175_090--Hb_141532_010 Hb_004363_010 Hb_004363_010 Hb_000175_090--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_000175_090--Hb_000976_260 Hb_000175_090--Hb_012114_060 Hb_002292_010 Hb_002292_010 Hb_000175_090--Hb_002292_010 Hb_000261_250 Hb_000261_250 Hb_000175_090--Hb_000261_250 Hb_000891_040 Hb_000891_040 Hb_087762_010--Hb_000891_040 Hb_155375_010 Hb_155375_010 Hb_087762_010--Hb_155375_010 Hb_002157_190 Hb_002157_190 Hb_087762_010--Hb_002157_190 Hb_002253_040 Hb_002253_040 Hb_087762_010--Hb_002253_040 Hb_007765_010 Hb_007765_010 Hb_087762_010--Hb_007765_010 Hb_000548_050 Hb_000548_050 Hb_012114_060--Hb_000548_050 Hb_005565_040 Hb_005565_040 Hb_012114_060--Hb_005565_040 Hb_052764_050 Hb_052764_050 Hb_012114_060--Hb_052764_050 Hb_000394_190 Hb_000394_190 Hb_012114_060--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_012114_060--Hb_001168_040 Hb_000787_170 Hb_000787_170 Hb_012114_060--Hb_000787_170 Hb_007778_020--Hb_000175_090 Hb_000504_170 Hb_000504_170 Hb_007778_020--Hb_000504_170 Hb_000258_320 Hb_000258_320 Hb_007778_020--Hb_000258_320 Hb_014720_170 Hb_014720_170 Hb_007778_020--Hb_014720_170 Hb_007083_010 Hb_007083_010 Hb_007778_020--Hb_007083_010 Hb_001951_260 Hb_001951_260 Hb_007558_010--Hb_001951_260 Hb_005535_050 Hb_005535_050 Hb_007558_010--Hb_005535_050 Hb_001504_070 Hb_001504_070 Hb_007558_010--Hb_001504_070 Hb_011828_050 Hb_011828_050 Hb_007558_010--Hb_011828_050 Hb_007441_210 Hb_007441_210 Hb_007558_010--Hb_007441_210 Hb_019962_030 Hb_019962_030 Hb_007558_010--Hb_019962_030 Hb_073973_170 Hb_073973_170 Hb_004137_030--Hb_073973_170 Hb_002619_010 Hb_002619_010 Hb_004137_030--Hb_002619_010 Hb_001623_370 Hb_001623_370 Hb_004137_030--Hb_001623_370 Hb_000714_020 Hb_000714_020 Hb_004137_030--Hb_000714_020 Hb_004994_310 Hb_004994_310 Hb_004137_030--Hb_004994_310 Hb_001956_050 Hb_001956_050 Hb_004137_030--Hb_001956_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26414 1.19826 1.59071 0.438066 0.908023 3.35391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44564 2.3869 0.306894 0.414823 0.453895

CAGE analysis