Hb_073973_170

Information

Type -
Description -
Location Contig73973: 131653-142607
Sequence    

Annotation

kegg
ID cit:102623413
description hypothetical protein
nr
ID XP_012078212.1
description PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12076 PE=4 SV=1
Gene Ontology
ID GO:0010207
description thioredoxin superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56344: 129240-131921 , PASA_asmbl_56345: 132174-142581 , PASA_asmbl_56347: 139145-139481 , PASA_asmbl_56348: 141697-141894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_170 0.0 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
2 Hb_004137_030 0.0916736343 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002619_010 0.1011128012 - - -
4 Hb_001956_050 0.12200916 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
5 Hb_000714_020 0.1386706457 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
6 Hb_001405_050 0.1399120955 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
7 Hb_027380_040 0.1413024892 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
8 Hb_002681_040 0.1424707784 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
9 Hb_011609_030 0.1470242346 - - conserved hypothetical protein 13 [Hevea brasiliensis]
10 Hb_000205_120 0.1471418399 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
11 Hb_001956_120 0.1477981472 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001623_370 0.1480359311 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000590_090 0.1493524915 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_005741_020 0.1512137435 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
15 Hb_001514_020 0.1513797442 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
16 Hb_001663_110 0.1520606384 - - RNA binding protein, putative [Ricinus communis]
17 Hb_003813_200 0.1523075639 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_000768_050 0.1525459543 - - hypothetical protein RCOM_0845740 [Ricinus communis]
19 Hb_007741_170 0.1551876467 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
20 Hb_003688_100 0.1555157962 - - Uncharacterized protein TCM_002515 [Theobroma cacao]

Gene co-expression network

sample Hb_073973_170 Hb_073973_170 Hb_004137_030 Hb_004137_030 Hb_073973_170--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_073973_170--Hb_002619_010 Hb_001956_050 Hb_001956_050 Hb_073973_170--Hb_001956_050 Hb_000714_020 Hb_000714_020 Hb_073973_170--Hb_000714_020 Hb_001405_050 Hb_001405_050 Hb_073973_170--Hb_001405_050 Hb_027380_040 Hb_027380_040 Hb_073973_170--Hb_027380_040 Hb_004137_030--Hb_002619_010 Hb_001623_370 Hb_001623_370 Hb_004137_030--Hb_001623_370 Hb_004137_030--Hb_000714_020 Hb_004994_310 Hb_004994_310 Hb_004137_030--Hb_004994_310 Hb_004137_030--Hb_001956_050 Hb_002619_010--Hb_000714_020 Hb_004374_010 Hb_004374_010 Hb_002619_010--Hb_004374_010 Hb_005741_020 Hb_005741_020 Hb_002619_010--Hb_005741_020 Hb_000590_090 Hb_000590_090 Hb_002619_010--Hb_000590_090 Hb_001956_050--Hb_000714_020 Hb_011930_010 Hb_011930_010 Hb_001956_050--Hb_011930_010 Hb_011609_030 Hb_011609_030 Hb_001956_050--Hb_011609_030 Hb_007416_200 Hb_007416_200 Hb_001956_050--Hb_007416_200 Hb_003813_200 Hb_003813_200 Hb_001956_050--Hb_003813_200 Hb_000714_020--Hb_011609_030 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_000714_020--Hb_004374_010 Hb_143766_090 Hb_143766_090 Hb_001405_050--Hb_143766_090 Hb_001776_090 Hb_001776_090 Hb_001405_050--Hb_001776_090 Hb_019962_030 Hb_019962_030 Hb_001405_050--Hb_019962_030 Hb_002681_040 Hb_002681_040 Hb_001405_050--Hb_002681_040 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_000538_020 Hb_000538_020 Hb_001405_050--Hb_000538_020 Hb_005298_060 Hb_005298_060 Hb_027380_040--Hb_005298_060 Hb_004286_040 Hb_004286_040 Hb_027380_040--Hb_004286_040 Hb_006120_200 Hb_006120_200 Hb_027380_040--Hb_006120_200 Hb_027380_040--Hb_004137_030 Hb_027380_040--Hb_002619_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.315 16.5887 39.4818 5.64801 49.1432 57.9966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.7276 40.9344 17.212 9.40604 3.74736

CAGE analysis