Hb_005298_060

Information

Type -
Description -
Location Contig5298: 65090-65512
Sequence    

Annotation

kegg
ID mdm:103410396
description caffeic acid 3-O-methyltransferase-like
nr
ID XP_008347322.1
description PREDICTED: caffeic acid 3-O-methyltransferase-like [Malus domestica]
swissprot
ID -
description -
trembl
ID I6NIE9
description Caffeic acid-O-methyltransferase (Fragment) OS=Medicago sativa subsp. falcata GN=COMT PE=4 SV=1
Gene Ontology
ID GO:0005634
description caffeic acid 3-o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47288: 64941-65681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005298_060 0.0 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Malus domestica]
2 Hb_007741_170 0.1030154697 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
3 Hb_027380_040 0.1285457987 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
4 Hb_000138_190 0.1302411175 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
5 Hb_004738_090 0.1601967598 - - conserved hypothetical protein [Ricinus communis]
6 Hb_178968_150 0.1615956425 - - zinc finger protein, putative [Ricinus communis]
7 Hb_001140_160 0.1622764623 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_002078_430 0.1634075346 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
9 Hb_006120_200 0.1640898128 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
10 Hb_000028_470 0.1641249071 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
11 Hb_073973_170 0.1657790714 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
12 Hb_001269_150 0.1668138695 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
13 Hb_002027_300 0.1671781489 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
14 Hb_000590_090 0.1678136264 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_019516_040 0.1692068135 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
16 Hb_000997_260 0.1697730067 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
17 Hb_001493_100 0.1704384722 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
18 Hb_000714_020 0.172335366 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
19 Hb_004137_030 0.1740255211 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000641_030 0.1747005757 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]

Gene co-expression network

sample Hb_005298_060 Hb_005298_060 Hb_007741_170 Hb_007741_170 Hb_005298_060--Hb_007741_170 Hb_027380_040 Hb_027380_040 Hb_005298_060--Hb_027380_040 Hb_000138_190 Hb_000138_190 Hb_005298_060--Hb_000138_190 Hb_004738_090 Hb_004738_090 Hb_005298_060--Hb_004738_090 Hb_178968_150 Hb_178968_150 Hb_005298_060--Hb_178968_150 Hb_001140_160 Hb_001140_160 Hb_005298_060--Hb_001140_160 Hb_007741_170--Hb_000138_190 Hb_073973_170 Hb_073973_170 Hb_007741_170--Hb_073973_170 Hb_002307_050 Hb_002307_050 Hb_007741_170--Hb_002307_050 Hb_007741_170--Hb_027380_040 Hb_002078_430 Hb_002078_430 Hb_007741_170--Hb_002078_430 Hb_004286_040 Hb_004286_040 Hb_027380_040--Hb_004286_040 Hb_006120_200 Hb_006120_200 Hb_027380_040--Hb_006120_200 Hb_027380_040--Hb_073973_170 Hb_004137_030 Hb_004137_030 Hb_027380_040--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_027380_040--Hb_002619_010 Hb_002025_230 Hb_002025_230 Hb_000138_190--Hb_002025_230 Hb_031042_040 Hb_031042_040 Hb_000138_190--Hb_031042_040 Hb_001195_110 Hb_001195_110 Hb_000138_190--Hb_001195_110 Hb_003636_090 Hb_003636_090 Hb_000138_190--Hb_003636_090 Hb_002067_160 Hb_002067_160 Hb_004738_090--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_004738_090--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_178968_150--Hb_000028_470 Hb_001493_100 Hb_001493_100 Hb_178968_150--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_178968_150--Hb_004813_010 Hb_005754_020 Hb_005754_020 Hb_178968_150--Hb_005754_020 Hb_000784_090 Hb_000784_090 Hb_178968_150--Hb_000784_090 Hb_000957_040 Hb_000957_040 Hb_001140_160--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001140_160--Hb_000762_020 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_012347_010 Hb_012347_010 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
270.321 9.23429 50.005 20.3417 92.3591 126.795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
161.645 64.6797 80.2524 4.1254 0.756483

CAGE analysis