Hb_004286_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4286: 81764-85025
Sequence    

Annotation

kegg
ID rcu:RCOM_1586090
description DNA binding protein, putative
nr
ID XP_012068164.1
description PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
swissprot
ID Q6NKN9
description Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=1 SV=1
trembl
ID A0A067L2W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15985 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh74 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42083: 84293-84532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004286_040 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
2 Hb_006120_200 0.1222999743 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
3 Hb_027380_040 0.1346244319 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
4 Hb_000120_240 0.1347155403 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
5 Hb_000956_130 0.1381343835 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
6 Hb_002043_180 0.1389727282 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
7 Hb_002027_220 0.140961478 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_000481_020 0.1433405065 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
9 Hb_003018_140 0.1448015359 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
10 Hb_000529_160 0.1452582973 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
11 Hb_004007_160 0.147904613 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
12 Hb_033153_050 0.148061621 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
13 Hb_002759_250 0.1483033271 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
14 Hb_076787_010 0.1489211015 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
15 Hb_028358_010 0.1517921093 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
16 Hb_000179_170 0.1538633988 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
17 Hb_007894_140 0.1546669701 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
18 Hb_005147_100 0.1549029053 - - conserved hypothetical protein [Ricinus communis]
19 Hb_100414_010 0.1549553209 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl pyrophosphate synthase [Hevea brasiliensis]
20 Hb_002681_020 0.1551320079 - - aldose 1-epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004286_040 Hb_004286_040 Hb_006120_200 Hb_006120_200 Hb_004286_040--Hb_006120_200 Hb_027380_040 Hb_027380_040 Hb_004286_040--Hb_027380_040 Hb_000120_240 Hb_000120_240 Hb_004286_040--Hb_000120_240 Hb_000956_130 Hb_000956_130 Hb_004286_040--Hb_000956_130 Hb_002043_180 Hb_002043_180 Hb_004286_040--Hb_002043_180 Hb_002027_220 Hb_002027_220 Hb_004286_040--Hb_002027_220 Hb_000762_020 Hb_000762_020 Hb_006120_200--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_006120_200--Hb_000481_020 Hb_001315_020 Hb_001315_020 Hb_006120_200--Hb_001315_020 Hb_006070_010 Hb_006070_010 Hb_006120_200--Hb_006070_010 Hb_002027_300 Hb_002027_300 Hb_006120_200--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_006120_200--Hb_000957_040 Hb_005298_060 Hb_005298_060 Hb_027380_040--Hb_005298_060 Hb_027380_040--Hb_006120_200 Hb_073973_170 Hb_073973_170 Hb_027380_040--Hb_073973_170 Hb_004137_030 Hb_004137_030 Hb_027380_040--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_027380_040--Hb_002619_010 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000120_240--Hb_000956_130 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_028358_010 Hb_028358_010 Hb_000956_130--Hb_028358_010 Hb_116349_160 Hb_116349_160 Hb_000956_130--Hb_116349_160 Hb_004007_160 Hb_004007_160 Hb_000956_130--Hb_004007_160 Hb_000761_020 Hb_000761_020 Hb_000956_130--Hb_000761_020 Hb_029920_050 Hb_029920_050 Hb_000956_130--Hb_029920_050 Hb_000768_050 Hb_000768_050 Hb_002043_180--Hb_000768_050 Hb_005883_030 Hb_005883_030 Hb_002043_180--Hb_005883_030 Hb_000000_080 Hb_000000_080 Hb_002043_180--Hb_000000_080 Hb_001158_040 Hb_001158_040 Hb_002043_180--Hb_001158_040 Hb_002272_250 Hb_002272_250 Hb_002043_180--Hb_002272_250 Hb_000265_150 Hb_000265_150 Hb_002043_180--Hb_000265_150 Hb_001268_210 Hb_001268_210 Hb_002027_220--Hb_001268_210 Hb_135810_010 Hb_135810_010 Hb_002027_220--Hb_135810_010 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_012390_010 Hb_012390_010 Hb_002027_220--Hb_012390_010 Hb_003654_010 Hb_003654_010 Hb_002027_220--Hb_003654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.4319 4.12983 5.38536 9.18561 10.8533 18.5629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1815 11.4357 12.4318 5.6959 5.76594

CAGE analysis