Hb_002027_220

Information

Type -
Description -
Location Contig2027: 120598-121878
Sequence    

Annotation

kegg
ID cic:CICLE_v10020489mg
description hypothetical protein
nr
ID XP_012092328.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID A0A067HHA5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044898mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description probably inactive leucine-rich repeat receptor-like protein kinase imk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20701: 120310-121987
cDNA
(Sanger)
(ID:Location)		 013_F02.ab1: 120505-121268 , 017_F17.ab1: 120500-121167 , 039_L11.ab1: 120505-121287

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_220 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_001268_210 0.0971467344 - - zinc finger protein, putative [Ricinus communis]
3 Hb_135810_010 0.1128124517 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
4 Hb_000120_240 0.1169985837 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
5 Hb_012977_010 0.118518537 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
6 Hb_012390_010 0.1263119917 - - pectate lyase 1 [Hevea brasiliensis]
7 Hb_003654_010 0.1321254514 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
8 Hb_002716_150 0.1356859104 - - starch synthase isoform I [Manihot esculenta]
9 Hb_004449_220 0.1404992484 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
10 Hb_000347_080 0.1406528671 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
11 Hb_004286_040 0.140961478 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
12 Hb_000956_130 0.1427443045 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
13 Hb_003376_100 0.1444783202 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
14 Hb_000258_080 0.1474656813 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
15 Hb_004724_430 0.1481981392 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
16 Hb_003216_110 0.1492028145 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
17 Hb_011282_030 0.1500830108 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
18 Hb_028358_010 0.1504373238 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
19 Hb_000416_100 0.1508406658 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
20 Hb_000086_200 0.1512679677 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002027_220 Hb_002027_220 Hb_001268_210 Hb_001268_210 Hb_002027_220--Hb_001268_210 Hb_135810_010 Hb_135810_010 Hb_002027_220--Hb_135810_010 Hb_000120_240 Hb_000120_240 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_012390_010 Hb_012390_010 Hb_002027_220--Hb_012390_010 Hb_003654_010 Hb_003654_010 Hb_002027_220--Hb_003654_010 Hb_003216_110 Hb_003216_110 Hb_001268_210--Hb_003216_110 Hb_004143_070 Hb_004143_070 Hb_001268_210--Hb_004143_070 Hb_000165_130 Hb_000165_130 Hb_001268_210--Hb_000165_130 Hb_000197_210 Hb_000197_210 Hb_001268_210--Hb_000197_210 Hb_002475_050 Hb_002475_050 Hb_001268_210--Hb_002475_050 Hb_002716_150 Hb_002716_150 Hb_135810_010--Hb_002716_150 Hb_000258_080 Hb_000258_080 Hb_135810_010--Hb_000258_080 Hb_031042_040 Hb_031042_040 Hb_135810_010--Hb_031042_040 Hb_011282_030 Hb_011282_030 Hb_135810_010--Hb_011282_030 Hb_000529_160 Hb_000529_160 Hb_135810_010--Hb_000529_160 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000956_130 Hb_000956_130 Hb_000120_240--Hb_000956_130 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_005725_070 Hb_005725_070 Hb_012977_010--Hb_005725_070 Hb_000347_080 Hb_000347_080 Hb_012977_010--Hb_000347_080 Hb_001969_040 Hb_001969_040 Hb_012977_010--Hb_001969_040 Hb_007786_010 Hb_007786_010 Hb_012977_010--Hb_007786_010 Hb_000363_340 Hb_000363_340 Hb_012977_010--Hb_000363_340 Hb_012977_010--Hb_000165_130 Hb_012390_010--Hb_000120_240 Hb_012390_010--Hb_000258_080 Hb_012390_010--Hb_004449_220 Hb_012390_010--Hb_057183_040 Hb_012390_010--Hb_002716_150 Hb_028358_010 Hb_028358_010 Hb_003654_010--Hb_028358_010 Hb_003654_010--Hb_000956_130 Hb_004705_040 Hb_004705_040 Hb_003654_010--Hb_004705_040 Hb_004007_160 Hb_004007_160 Hb_003654_010--Hb_004007_160 Hb_003304_050 Hb_003304_050 Hb_003654_010--Hb_003304_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
209.081 25.3304 21.5028 57.0911 90.1019 127.358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.9217 31.656 53.1259 9.90148 28.3947

CAGE analysis