Hb_012390_010

Information

Type -
Description -
Location Contig12390: 24294-28903
Sequence    

Annotation

kegg
ID pmum:103340088
description probable pectate lyase 4
nr
ID ABV60263.1
description pectate lyase 1 [Hevea brasiliensis]
swissprot
ID Q9C8G4
description Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1
trembl
ID B3SXR0
description Pectate lyase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0030570
description probable pectate lyase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07238: 24446-29151 , PASA_asmbl_07239: 24382-29151
cDNA
(Sanger)
(ID:Location)		 005_K04.ab1: 24435-27944 , 029_G21.ab1: 24435-27942 , 029_H21.ab1: 24435-27954 , 048_L21.ab1: 24435-27952

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012390_010 0.0 - - pectate lyase 1 [Hevea brasiliensis]
2 Hb_000120_240 0.1157333386 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
3 Hb_000258_080 0.1260146708 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
4 Hb_002027_220 0.1263119917 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_004449_220 0.1295306991 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
6 Hb_057183_040 0.1446724002 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
7 Hb_002716_150 0.1498707027 - - starch synthase isoform I [Manihot esculenta]
8 Hb_005432_010 0.1506850194 - - -
9 Hb_000625_020 0.1517093846 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000204_040 0.1535097726 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
11 Hb_000028_470 0.1553870354 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
12 Hb_004994_310 0.1565684965 - - Kiwellin, putative [Ricinus communis]
13 Hb_006637_060 0.1567605921 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
14 Hb_000416_100 0.1585530145 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
15 Hb_001268_210 0.1586678593 - - zinc finger protein, putative [Ricinus communis]
16 Hb_012977_010 0.1594756061 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
17 Hb_006829_040 0.159666702 - - hypothetical protein POPTR_0001s44750g [Populus trichocarpa]
18 Hb_001959_080 0.1611134882 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001673_010 0.1612967194 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
20 Hb_001840_080 0.1613199493 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]

Gene co-expression network

sample Hb_012390_010 Hb_012390_010 Hb_000120_240 Hb_000120_240 Hb_012390_010--Hb_000120_240 Hb_000258_080 Hb_000258_080 Hb_012390_010--Hb_000258_080 Hb_002027_220 Hb_002027_220 Hb_012390_010--Hb_002027_220 Hb_004449_220 Hb_004449_220 Hb_012390_010--Hb_004449_220 Hb_057183_040 Hb_057183_040 Hb_012390_010--Hb_057183_040 Hb_002716_150 Hb_002716_150 Hb_012390_010--Hb_002716_150 Hb_000120_240--Hb_004449_220 Hb_000956_130 Hb_000956_130 Hb_000120_240--Hb_000956_130 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_135810_010 Hb_135810_010 Hb_000258_080--Hb_135810_010 Hb_000258_430 Hb_000258_430 Hb_000258_080--Hb_000258_430 Hb_005167_040 Hb_005167_040 Hb_000258_080--Hb_005167_040 Hb_000258_080--Hb_057183_040 Hb_000031_030 Hb_000031_030 Hb_000258_080--Hb_000031_030 Hb_001268_210 Hb_001268_210 Hb_002027_220--Hb_001268_210 Hb_002027_220--Hb_135810_010 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_003654_010 Hb_003654_010 Hb_002027_220--Hb_003654_010 Hb_001969_040 Hb_001969_040 Hb_004449_220--Hb_001969_040 Hb_000347_080 Hb_000347_080 Hb_004449_220--Hb_000347_080 Hb_000186_280 Hb_000186_280 Hb_004449_220--Hb_000186_280 Hb_000205_120 Hb_000205_120 Hb_004449_220--Hb_000205_120 Hb_004678_060 Hb_004678_060 Hb_004449_220--Hb_004678_060 Hb_008453_150 Hb_008453_150 Hb_057183_040--Hb_008453_150 Hb_057183_040--Hb_000028_470 Hb_001140_200 Hb_001140_200 Hb_057183_040--Hb_001140_200 Hb_001823_100 Hb_001823_100 Hb_057183_040--Hb_001823_100 Hb_003060_070 Hb_003060_070 Hb_057183_040--Hb_003060_070 Hb_002716_150--Hb_135810_010 Hb_014568_030 Hb_014568_030 Hb_002716_150--Hb_014568_030 Hb_001855_010 Hb_001855_010 Hb_002716_150--Hb_001855_010 Hb_031042_040 Hb_031042_040 Hb_002716_150--Hb_031042_040 Hb_003055_050 Hb_003055_050 Hb_002716_150--Hb_003055_050 Hb_003376_100 Hb_003376_100 Hb_002716_150--Hb_003376_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
353.596 35.4533 26.2333 77.7041 112.579 288.5
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.644 123.843 88.2688 21.6409 57.2971

CAGE analysis