Hb_000258_430

Information

Type transcription factor
Description TF Family: HB
Location Contig258: 407915-410538
Sequence    

Annotation

kegg
ID rcu:RCOM_0697240
description homeobox protein, putative
nr
ID XP_002520111.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID Q8LC03
description Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2
trembl
ID B9S292
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_0697240 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26860: 407732-410523 , PASA_asmbl_26861: 408511-410521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_430 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_002450_050 0.0873634119 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
3 Hb_006551_010 0.0928034816 - - electron transporter, putative [Ricinus communis]
4 Hb_001017_090 0.0941748603 - - -
5 Hb_000028_470 0.0973108802 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
6 Hb_010174_130 0.0989828382 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
7 Hb_003404_030 0.099312122 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_178968_150 0.1018999577 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001476_100 0.1071888154 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007766_010 0.1073819025 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
11 Hb_004724_040 0.1111864161 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
12 Hb_010174_120 0.1117801352 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
13 Hb_002067_160 0.1145948888 - - Protein MLO, putative [Ricinus communis]
14 Hb_001047_020 0.1149009895 - - -
15 Hb_002506_010 0.1170757115 - - choline transporter-related family protein [Populus trichocarpa]
16 Hb_000084_310 0.1192580463 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
17 Hb_003428_110 0.1199188385 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
18 Hb_004738_090 0.1202212066 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000784_090 0.1208826328 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
20 Hb_001673_120 0.1222533033 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_430 Hb_000258_430 Hb_002450_050 Hb_002450_050 Hb_000258_430--Hb_002450_050 Hb_006551_010 Hb_006551_010 Hb_000258_430--Hb_006551_010 Hb_001017_090 Hb_001017_090 Hb_000258_430--Hb_001017_090 Hb_000028_470 Hb_000028_470 Hb_000258_430--Hb_000028_470 Hb_010174_130 Hb_010174_130 Hb_000258_430--Hb_010174_130 Hb_003404_030 Hb_003404_030 Hb_000258_430--Hb_003404_030 Hb_004738_090 Hb_004738_090 Hb_002450_050--Hb_004738_090 Hb_027751_020 Hb_027751_020 Hb_002450_050--Hb_027751_020 Hb_002067_160 Hb_002067_160 Hb_002450_050--Hb_002067_160 Hb_002232_180 Hb_002232_180 Hb_002450_050--Hb_002232_180 Hb_002450_050--Hb_003404_030 Hb_000313_380 Hb_000313_380 Hb_006551_010--Hb_000313_380 Hb_001981_090 Hb_001981_090 Hb_006551_010--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_006551_010--Hb_000805_090 Hb_001140_200 Hb_001140_200 Hb_006551_010--Hb_001140_200 Hb_011174_070 Hb_011174_070 Hb_006551_010--Hb_011174_070 Hb_002506_010 Hb_002506_010 Hb_001017_090--Hb_002506_010 Hb_001476_100 Hb_001476_100 Hb_001017_090--Hb_001476_100 Hb_009510_030 Hb_009510_030 Hb_001017_090--Hb_009510_030 Hb_010931_100 Hb_010931_100 Hb_001017_090--Hb_010931_100 Hb_000264_190 Hb_000264_190 Hb_001017_090--Hb_000264_190 Hb_005754_020 Hb_005754_020 Hb_000028_470--Hb_005754_020 Hb_178968_150 Hb_178968_150 Hb_000028_470--Hb_178968_150 Hb_001493_100 Hb_001493_100 Hb_000028_470--Hb_001493_100 Hb_002377_040 Hb_002377_040 Hb_000028_470--Hb_002377_040 Hb_001673_120 Hb_001673_120 Hb_000028_470--Hb_001673_120 Hb_000784_090 Hb_000784_090 Hb_000028_470--Hb_000784_090 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_010174_130--Hb_002506_010 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_010174_130--Hb_003404_030 Hb_000029_030 Hb_000029_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200 Hb_000057_060 Hb_000057_060 Hb_003404_030--Hb_000057_060 Hb_003404_030--Hb_002506_010 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
308.091 29.5 14.935 68.1419 173.089 224.159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.505 132.359 226.609 29.7705 8.80623

CAGE analysis