Hb_002450_050

Information

Type -
Description -
Location Contig2450: 31107-43536
Sequence    

Annotation

kegg
ID sly:101257572
description geraniol 8-hydroxylase-like
nr
ID XP_004241762.2
description PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
swissprot
ID C0SJS4
description Psoralen synthase (Fragment) OS=Apium graveolens GN=CYP71AJ2 PE=1 SV=1
trembl
ID R0HAX6
description Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10022591mg PE=4 SV=1
Gene Ontology
ID GO:0005506
description probable -n-methylcoclaurine 3 -hydroxylase isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25566: 35514-37425 , PASA_asmbl_25567: 35514-53005
cDNA
(Sanger)
(ID:Location)		 002_H13.ab1: 36604-37420 , 013_N12.ab1: 36765-37425 , 039_F05.ab1: 36701-37420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_050 0.0 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
2 Hb_000258_430 0.0873634119 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_004738_090 0.0978597727 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027751_020 0.1034393153 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
5 Hb_002067_160 0.1059179701 - - Protein MLO, putative [Ricinus communis]
6 Hb_002232_180 0.1073441057 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
7 Hb_003404_030 0.1106792975 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_010931_100 0.112757858 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
9 Hb_001017_090 0.115065759 - - -
10 Hb_002609_260 0.1176564217 - - CCCH-type zinc finger protein [Hevea brasiliensis]
11 Hb_002506_010 0.1196560638 - - choline transporter-related family protein [Populus trichocarpa]
12 Hb_000264_190 0.1197531048 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
13 Hb_007178_010 0.120926708 - - pseudo-hevein [Hevea brasiliensis]
14 Hb_003906_110 0.1226629772 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
15 Hb_000249_110 0.1231981811 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
16 Hb_176022_020 0.1232191474 - - cytochrome P450, putative [Ricinus communis]
17 Hb_007810_040 0.1251371066 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
18 Hb_000563_540 0.1272020051 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
19 Hb_000376_110 0.1284514652 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
20 Hb_009510_030 0.1290092762 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002450_050 Hb_002450_050 Hb_000258_430 Hb_000258_430 Hb_002450_050--Hb_000258_430 Hb_004738_090 Hb_004738_090 Hb_002450_050--Hb_004738_090 Hb_027751_020 Hb_027751_020 Hb_002450_050--Hb_027751_020 Hb_002067_160 Hb_002067_160 Hb_002450_050--Hb_002067_160 Hb_002232_180 Hb_002232_180 Hb_002450_050--Hb_002232_180 Hb_003404_030 Hb_003404_030 Hb_002450_050--Hb_003404_030 Hb_006551_010 Hb_006551_010 Hb_000258_430--Hb_006551_010 Hb_001017_090 Hb_001017_090 Hb_000258_430--Hb_001017_090 Hb_000028_470 Hb_000028_470 Hb_000258_430--Hb_000028_470 Hb_010174_130 Hb_010174_130 Hb_000258_430--Hb_010174_130 Hb_000258_430--Hb_003404_030 Hb_004738_090--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_000249_110 Hb_000249_110 Hb_027751_020--Hb_000249_110 Hb_000571_070 Hb_000571_070 Hb_027751_020--Hb_000571_070 Hb_002609_260 Hb_002609_260 Hb_027751_020--Hb_002609_260 Hb_027751_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_027751_020--Hb_000563_540 Hb_027751_020--Hb_000264_190 Hb_002067_160--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_002067_160--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_002067_160--Hb_007178_010 Hb_026048_090 Hb_026048_090 Hb_002067_160--Hb_026048_090 Hb_002067_160--Hb_002232_180 Hb_002232_180--Hb_007178_010 Hb_007810_040 Hb_007810_040 Hb_002232_180--Hb_007810_040 Hb_002232_180--Hb_002609_260 Hb_002232_180--Hb_005488_100 Hb_000057_060 Hb_000057_060 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_003404_030--Hb_010174_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
153.976 7.23516 2.17044 23.685 103.399 86.4596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.6693 52.1083 105.506 8.74405 3.035

CAGE analysis