Hb_003654_010

Information

Type -
Description -
Location Contig3654: 6220-8294
Sequence    

Annotation

kegg
ID rcu:RCOM_1510860
description Polygalacturonase-1 non-catalytic subunit beta precursor, putative
nr
ID XP_012080086.1
description PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
swissprot
ID P92982
description Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2
trembl
ID A0A067K7W3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11489 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37625: 6078-7844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003654_010 0.0 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
2 Hb_028358_010 0.1288856255 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
3 Hb_002027_220 0.1321254514 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_000956_130 0.1431504344 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
5 Hb_004705_040 0.1460733651 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
6 Hb_004007_160 0.1618123837 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
7 Hb_003304_050 0.16367903 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
8 Hb_004286_040 0.1667370859 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
9 Hb_000120_240 0.175857109 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
10 Hb_000548_030 0.1758918854 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
11 Hb_001268_210 0.1793799491 - - zinc finger protein, putative [Ricinus communis]
12 Hb_116349_160 0.1813812959 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
13 Hb_000554_010 0.183344311 - - transporter, putative [Ricinus communis]
14 Hb_135810_010 0.1873302289 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
15 Hb_000179_200 0.188653673 - - unnamed protein product [Vitis vinifera]
16 Hb_000258_150 0.1891767951 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
17 Hb_000990_080 0.1968341807 - - gulonolactone oxidase, putative [Ricinus communis]
18 Hb_000072_070 0.196995949 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
19 Hb_000347_080 0.1971937442 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
20 Hb_005867_060 0.1972538431 - - PREDICTED: NADPH--cytochrome P450 reductase [Jatropha curcas]

Gene co-expression network

sample Hb_003654_010 Hb_003654_010 Hb_028358_010 Hb_028358_010 Hb_003654_010--Hb_028358_010 Hb_002027_220 Hb_002027_220 Hb_003654_010--Hb_002027_220 Hb_000956_130 Hb_000956_130 Hb_003654_010--Hb_000956_130 Hb_004705_040 Hb_004705_040 Hb_003654_010--Hb_004705_040 Hb_004007_160 Hb_004007_160 Hb_003654_010--Hb_004007_160 Hb_003304_050 Hb_003304_050 Hb_003654_010--Hb_003304_050 Hb_028358_010--Hb_000956_130 Hb_116349_160 Hb_116349_160 Hb_028358_010--Hb_116349_160 Hb_028358_010--Hb_004007_160 Hb_000761_020 Hb_000761_020 Hb_028358_010--Hb_000761_020 Hb_000120_240 Hb_000120_240 Hb_028358_010--Hb_000120_240 Hb_000390_170 Hb_000390_170 Hb_028358_010--Hb_000390_170 Hb_001268_210 Hb_001268_210 Hb_002027_220--Hb_001268_210 Hb_135810_010 Hb_135810_010 Hb_002027_220--Hb_135810_010 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_012390_010 Hb_012390_010 Hb_002027_220--Hb_012390_010 Hb_000956_130--Hb_116349_160 Hb_000956_130--Hb_004007_160 Hb_000956_130--Hb_000120_240 Hb_000956_130--Hb_000761_020 Hb_029920_050 Hb_029920_050 Hb_000956_130--Hb_029920_050 Hb_004705_040--Hb_004007_160 Hb_000554_010 Hb_000554_010 Hb_004705_040--Hb_000554_010 Hb_000299_040 Hb_000299_040 Hb_004705_040--Hb_000299_040 Hb_004705_040--Hb_000956_130 Hb_000649_050 Hb_000649_050 Hb_004705_040--Hb_000649_050 Hb_007479_050 Hb_007479_050 Hb_004705_040--Hb_007479_050 Hb_004007_160--Hb_000554_010 Hb_004007_160--Hb_000649_050 Hb_004007_160--Hb_000299_040 Hb_003687_200 Hb_003687_200 Hb_003304_050--Hb_003687_200 Hb_000641_030 Hb_000641_030 Hb_003304_050--Hb_000641_030 Hb_000548_030 Hb_000548_030 Hb_003304_050--Hb_000548_030 Hb_026447_030 Hb_026447_030 Hb_003304_050--Hb_026447_030 Hb_003304_050--Hb_002027_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.3021 3.63698 13.6035 19.7719 18.9219 22.8246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9327 4.63735 13.2117 3.01948 4.26792

CAGE analysis