Hb_003376_100

Information

Type -
Description -
Location Contig3376: 67029-67955
Sequence    

Annotation

kegg
ID rcu:RCOM_0819400
description hypothetical protein
nr
ID XP_012082314.1
description PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_100 0.0 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
2 Hb_005829_010 0.0965624512 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
3 Hb_000265_150 0.1060367163 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
4 Hb_000085_060 0.109208465 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
5 Hb_002716_150 0.1122849311 - - starch synthase isoform I [Manihot esculenta]
6 Hb_000205_120 0.1160151964 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
7 Hb_076787_010 0.1164494277 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
8 Hb_017098_030 0.1175789669 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
9 Hb_004724_430 0.11924569 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
10 Hb_000359_170 0.1223646107 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
11 Hb_001014_010 0.1235906763 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
12 Hb_134364_010 0.1246979883 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
13 Hb_005237_060 0.1251658047 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
14 Hb_000529_080 0.1260866509 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
15 Hb_000997_270 0.1271734372 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
16 Hb_002400_220 0.1286046665 - - Vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_000176_110 0.1300406398 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
18 Hb_008253_010 0.1305096416 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
19 Hb_000347_080 0.130698583 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
20 Hb_000179_170 0.1336459909 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_100 Hb_003376_100 Hb_005829_010 Hb_005829_010 Hb_003376_100--Hb_005829_010 Hb_000265_150 Hb_000265_150 Hb_003376_100--Hb_000265_150 Hb_000085_060 Hb_000085_060 Hb_003376_100--Hb_000085_060 Hb_002716_150 Hb_002716_150 Hb_003376_100--Hb_002716_150 Hb_000205_120 Hb_000205_120 Hb_003376_100--Hb_000205_120 Hb_076787_010 Hb_076787_010 Hb_003376_100--Hb_076787_010 Hb_005829_010--Hb_000085_060 Hb_001124_120 Hb_001124_120 Hb_005829_010--Hb_001124_120 Hb_134364_010 Hb_134364_010 Hb_005829_010--Hb_134364_010 Hb_000922_330 Hb_000922_330 Hb_005829_010--Hb_000922_330 Hb_008253_010 Hb_008253_010 Hb_005829_010--Hb_008253_010 Hb_000265_150--Hb_000205_120 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_004722_060 Hb_004722_060 Hb_000265_150--Hb_004722_060 Hb_000529_080 Hb_000529_080 Hb_000265_150--Hb_000529_080 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160 Hb_000085_060--Hb_001124_120 Hb_000085_060--Hb_076787_010 Hb_031939_010 Hb_031939_010 Hb_000085_060--Hb_031939_010 Hb_001014_010 Hb_001014_010 Hb_000085_060--Hb_001014_010 Hb_003406_010 Hb_003406_010 Hb_000085_060--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000085_060--Hb_007218_080 Hb_135810_010 Hb_135810_010 Hb_002716_150--Hb_135810_010 Hb_014568_030 Hb_014568_030 Hb_002716_150--Hb_014568_030 Hb_001855_010 Hb_001855_010 Hb_002716_150--Hb_001855_010 Hb_031042_040 Hb_031042_040 Hb_002716_150--Hb_031042_040 Hb_003055_050 Hb_003055_050 Hb_002716_150--Hb_003055_050 Hb_000205_120--Hb_000529_080 Hb_004447_030 Hb_004447_030 Hb_000205_120--Hb_004447_030 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000205_120--Hb_000976_270 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_005063_040 Hb_005063_040 Hb_076787_010--Hb_005063_040 Hb_001776_110 Hb_001776_110 Hb_076787_010--Hb_001776_110 Hb_001862_190 Hb_001862_190 Hb_076787_010--Hb_001862_190 Hb_000179_170 Hb_000179_170 Hb_076787_010--Hb_000179_170 Hb_006692_030 Hb_006692_030 Hb_076787_010--Hb_006692_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.1778 11.7754 10.7933 10.5459 45.5946 40.0788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.5465 20.473 16.3746 3.9038 14.4456

CAGE analysis