Hb_006070_010

Information

Type rubber biosynthesis
Description Gene Name: CPT2
Location Contig6070: 24430-25320
Sequence    

Annotation

kegg
ID pmum:103334495
description dehydrodolichyl diphosphate synthase 6-like
nr
ID AAM92882.1
description cis-prenyltransferase 3 [Hevea brasiliensis]
swissprot
ID Q8W3U4
description Rubber cis-polyprenyltransferase HRT2 OS=Hevea brasiliensis GN=HRT2 PE=1 SV=1
trembl
ID Q8L3U6
description Cis-prenyl transferase II OS=Hevea brasiliensis GN=Hpt3 PE=2 SV=1
Gene Ontology
ID GO:0050267
description dehydrodolichyl diphosphate synthase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50805: 24185-25823 , PASA_asmbl_50806: 24185-25716
cDNA
(Sanger)
(ID:Location)		 009_H19.ab1: 24894-25823 , 035_L09.ab1: 24940-25716 , 036_A18.ab1: 24528-25312 , 038_L14.ab1: 25171-25652

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006070_010 0.0 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
2 Hb_007766_010 0.0929586474 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
3 Hb_055335_010 0.1080324658 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
4 Hb_001315_020 0.1105472645 - - ring finger protein, putative [Ricinus communis]
5 Hb_006120_200 0.1138925216 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
6 Hb_000481_020 0.1279105815 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
7 Hb_000762_020 0.1322006034 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
8 Hb_004659_120 0.1402724535 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
9 Hb_000957_040 0.1419292982 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_004724_040 0.1420492454 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
11 Hb_002876_030 0.1431250954 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
12 Hb_000258_430 0.1433582915 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_001696_030 0.1447408333 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001141_470 0.1447823474 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
15 Hb_000184_040 0.1494325698 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
16 Hb_010174_120 0.1497584852 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
17 Hb_001140_160 0.1521836122 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
18 Hb_000258_080 0.1534762193 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
19 Hb_010483_020 0.1541351187 - - latex allergen [Hevea brasiliensis]
20 Hb_002027_300 0.1542850806 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006070_010 Hb_006070_010 Hb_007766_010 Hb_007766_010 Hb_006070_010--Hb_007766_010 Hb_055335_010 Hb_055335_010 Hb_006070_010--Hb_055335_010 Hb_001315_020 Hb_001315_020 Hb_006070_010--Hb_001315_020 Hb_006120_200 Hb_006120_200 Hb_006070_010--Hb_006120_200 Hb_000481_020 Hb_000481_020 Hb_006070_010--Hb_000481_020 Hb_000762_020 Hb_000762_020 Hb_006070_010--Hb_000762_020 Hb_004724_040 Hb_004724_040 Hb_007766_010--Hb_004724_040 Hb_007766_010--Hb_000481_020 Hb_010483_020 Hb_010483_020 Hb_007766_010--Hb_010483_020 Hb_000258_430 Hb_000258_430 Hb_007766_010--Hb_000258_430 Hb_001696_030 Hb_001696_030 Hb_007766_010--Hb_001696_030 Hb_001141_470 Hb_001141_470 Hb_055335_010--Hb_001141_470 Hb_055335_010--Hb_001315_020 Hb_005455_070 Hb_005455_070 Hb_055335_010--Hb_005455_070 Hb_002027_300 Hb_002027_300 Hb_055335_010--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_055335_010--Hb_000957_040 Hb_001315_020--Hb_002027_300 Hb_001315_020--Hb_006120_200 Hb_001315_020--Hb_001141_470 Hb_001140_160 Hb_001140_160 Hb_001315_020--Hb_001140_160 Hb_006120_200--Hb_000762_020 Hb_006120_200--Hb_000481_020 Hb_006120_200--Hb_002027_300 Hb_006120_200--Hb_000957_040 Hb_003777_180 Hb_003777_180 Hb_000481_020--Hb_003777_180 Hb_000184_040 Hb_000184_040 Hb_000481_020--Hb_000184_040 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_000762_020--Hb_000957_040 Hb_000762_020--Hb_001140_160 Hb_000762_020--Hb_000184_040 Hb_012347_010 Hb_012347_010 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
642.069 17.9336 24.3146 211.287 154.929 362.223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
520.397 247.62 475.591 35.9363 23.2782

CAGE analysis