Hb_055335_010

Information

Type -
Description -
Location Contig55335: 5093-6731
Sequence    

Annotation

kegg
ID tcc:TCM_037681
description Tetraspanin2
nr
ID XP_012076906.1
description PREDICTED: tetraspanin-2 [Jatropha curcas]
swissprot
ID Q9ZUN5
description Tetraspanin-2 OS=Arabidopsis thaliana GN=TET2 PE=2 SV=1
trembl
ID A0A067KPT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07390 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48341: 5271-6671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055335_010 0.0 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
2 Hb_001141_470 0.0869623384 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
3 Hb_001315_020 0.0978031256 - - ring finger protein, putative [Ricinus communis]
4 Hb_006070_010 0.1080324658 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
5 Hb_005455_070 0.1178518467 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
6 Hb_002027_300 0.1231481424 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
7 Hb_000957_040 0.1252276482 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
8 Hb_006120_200 0.1319922371 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
9 Hb_007766_010 0.1368423651 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
10 Hb_006551_010 0.1370507222 - - electron transporter, putative [Ricinus communis]
11 Hb_000762_020 0.1370738559 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
12 Hb_010174_120 0.1384830359 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
13 Hb_012347_010 0.1385428555 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
14 Hb_002291_030 0.1405254508 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
15 Hb_001478_050 0.1411521203 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
16 Hb_012522_030 0.1426907152 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_171554_080 0.1429412222 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
18 Hb_002326_030 0.1443847578 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
19 Hb_054865_130 0.1462805413 - - acyltransferase, putative [Ricinus communis]
20 Hb_004724_040 0.147205857 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_055335_010 Hb_055335_010 Hb_001141_470 Hb_001141_470 Hb_055335_010--Hb_001141_470 Hb_001315_020 Hb_001315_020 Hb_055335_010--Hb_001315_020 Hb_006070_010 Hb_006070_010 Hb_055335_010--Hb_006070_010 Hb_005455_070 Hb_005455_070 Hb_055335_010--Hb_005455_070 Hb_002027_300 Hb_002027_300 Hb_055335_010--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_055335_010--Hb_000957_040 Hb_001141_470--Hb_005455_070 Hb_012522_030 Hb_012522_030 Hb_001141_470--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_001141_470--Hb_002326_030 Hb_010174_120 Hb_010174_120 Hb_001141_470--Hb_010174_120 Hb_000419_040 Hb_000419_040 Hb_001141_470--Hb_000419_040 Hb_001315_020--Hb_002027_300 Hb_006120_200 Hb_006120_200 Hb_001315_020--Hb_006120_200 Hb_001315_020--Hb_006070_010 Hb_001315_020--Hb_001141_470 Hb_001140_160 Hb_001140_160 Hb_001315_020--Hb_001140_160 Hb_007766_010 Hb_007766_010 Hb_006070_010--Hb_007766_010 Hb_006070_010--Hb_006120_200 Hb_000481_020 Hb_000481_020 Hb_006070_010--Hb_000481_020 Hb_000762_020 Hb_000762_020 Hb_006070_010--Hb_000762_020 Hb_005455_070--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_005455_070--Hb_001478_050 Hb_008695_190 Hb_008695_190 Hb_005455_070--Hb_008695_190 Hb_001473_130 Hb_001473_130 Hb_005455_070--Hb_001473_130 Hb_001981_090 Hb_001981_090 Hb_005455_070--Hb_001981_090 Hb_012347_010 Hb_012347_010 Hb_002027_300--Hb_012347_010 Hb_002027_300--Hb_000957_040 Hb_002027_300--Hb_001140_160 Hb_002027_300--Hb_006120_200 Hb_010872_060 Hb_010872_060 Hb_002027_300--Hb_010872_060 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_012347_010 Hb_000130_390 Hb_000130_390 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_010872_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
113.268 11.3092 3.11628 21.3086 31.4032 55.9535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.689 55.2338 117.898 7.21478 3.49464

CAGE analysis