Hb_001158_040

Information

Type -
Description -
Location Contig1158: 8027-20636
Sequence    

Annotation

kegg
ID rcu:RCOM_1505110
description DNA binding protein, putative
nr
ID XP_012090650.1
description PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
swissprot
ID Q8W475
description SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1
trembl
ID A0A067JIC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26414 PE=4 SV=1
Gene Ontology
ID GO:0005634
description swi snf complex subunit swi3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04740: 17104-19148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_040 0.0 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
2 Hb_000265_150 0.0864343535 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
3 Hb_004241_070 0.098677625 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
4 Hb_000529_080 0.0986811334 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
5 Hb_000879_140 0.0999080409 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
6 Hb_000699_130 0.1019113311 - - conserved hypothetical protein [Ricinus communis]
7 Hb_150069_020 0.1019893752 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
8 Hb_000205_120 0.1027418877 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
9 Hb_000768_050 0.1035491702 - - hypothetical protein RCOM_0845740 [Ricinus communis]
10 Hb_001584_310 0.1062823995 - - hypothetical protein POPTR_0013s00630g [Populus trichocarpa]
11 Hb_000976_270 0.1099288134 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
12 Hb_005527_050 0.1112824824 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
13 Hb_002043_180 0.1147316733 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
14 Hb_005829_010 0.1150205459 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
15 Hb_002784_050 0.1167687367 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
16 Hb_008887_050 0.1169765033 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
17 Hb_002007_350 0.117824209 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
18 Hb_143629_010 0.1181455612 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_000342_110 0.1189040132 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
20 Hb_005714_040 0.1192251863 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001158_040 Hb_001158_040 Hb_000265_150 Hb_000265_150 Hb_001158_040--Hb_000265_150 Hb_004241_070 Hb_004241_070 Hb_001158_040--Hb_004241_070 Hb_000529_080 Hb_000529_080 Hb_001158_040--Hb_000529_080 Hb_000879_140 Hb_000879_140 Hb_001158_040--Hb_000879_140 Hb_000699_130 Hb_000699_130 Hb_001158_040--Hb_000699_130 Hb_150069_020 Hb_150069_020 Hb_001158_040--Hb_150069_020 Hb_000205_120 Hb_000205_120 Hb_000265_150--Hb_000205_120 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_004722_060 Hb_004722_060 Hb_000265_150--Hb_004722_060 Hb_000265_150--Hb_000529_080 Hb_000768_050 Hb_000768_050 Hb_000265_150--Hb_000768_050 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160 Hb_000236_280 Hb_000236_280 Hb_004241_070--Hb_000236_280 Hb_002942_220 Hb_002942_220 Hb_004241_070--Hb_002942_220 Hb_000923_040 Hb_000923_040 Hb_004241_070--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_004241_070--Hb_000104_080 Hb_002007_350 Hb_002007_350 Hb_004241_070--Hb_002007_350 Hb_004241_070--Hb_012305_070 Hb_000529_080--Hb_000205_120 Hb_000058_040 Hb_000058_040 Hb_000529_080--Hb_000058_040 Hb_008887_050 Hb_008887_050 Hb_000529_080--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000529_080--Hb_000976_270 Hb_031939_010 Hb_031939_010 Hb_000529_080--Hb_031939_010 Hb_000300_280 Hb_000300_280 Hb_000879_140--Hb_000300_280 Hb_004310_060 Hb_004310_060 Hb_000879_140--Hb_004310_060 Hb_000803_300 Hb_000803_300 Hb_000879_140--Hb_000803_300 Hb_000645_150 Hb_000645_150 Hb_000879_140--Hb_000645_150 Hb_000236_320 Hb_000236_320 Hb_000879_140--Hb_000236_320 Hb_007590_080 Hb_007590_080 Hb_000879_140--Hb_007590_080 Hb_007919_060 Hb_007919_060 Hb_000699_130--Hb_007919_060 Hb_001014_010 Hb_001014_010 Hb_000699_130--Hb_001014_010 Hb_022250_030 Hb_022250_030 Hb_000699_130--Hb_022250_030 Hb_005245_130 Hb_005245_130 Hb_000699_130--Hb_005245_130 Hb_001124_120 Hb_001124_120 Hb_000699_130--Hb_001124_120 Hb_000699_130--Hb_031939_010 Hb_003728_020 Hb_003728_020 Hb_150069_020--Hb_003728_020 Hb_002272_250 Hb_002272_250 Hb_150069_020--Hb_002272_250 Hb_005527_050 Hb_005527_050 Hb_150069_020--Hb_005527_050 Hb_076787_010 Hb_076787_010 Hb_150069_020--Hb_076787_010 Hb_003453_020 Hb_003453_020 Hb_150069_020--Hb_003453_020 Hb_002249_140 Hb_002249_140 Hb_150069_020--Hb_002249_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12409 2.33797 1.61032 1.26926 7.63716 4.06831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8704 4.32904 2.09038 2.26338 1.51655

CAGE analysis