Hb_003018_180

Information

Type -
Description -
Location Contig3018: 84747-86325
Sequence    

Annotation

kegg
ID rcu:RCOM_0871210
description hypothetical protein
nr
ID XP_012066306.1
description PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
swissprot
ID O48822
description WEB family protein At2g17940 OS=Arabidopsis thaliana GN=At2g17940 PE=2 SV=1
trembl
ID A0A067LHD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06531 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31771: 84832-86113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_180 0.0 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
2 Hb_000130_390 0.0858315822 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
3 Hb_001140_160 0.0994981364 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
4 Hb_000957_040 0.110195834 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
5 Hb_002298_040 0.1122804964 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
6 Hb_004545_150 0.1162288398 - - PREDICTED: paramyosin [Jatropha curcas]
7 Hb_001780_060 0.1168372397 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
8 Hb_006735_040 0.1215477835 - - unnamed protein product [Vitis vinifera]
9 Hb_000784_130 0.1237063817 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
10 Hb_000500_310 0.1237255588 - - -
11 Hb_000264_190 0.125631341 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
12 Hb_012347_010 0.1269559515 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
13 Hb_010098_080 0.1292248194 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
14 Hb_000753_260 0.1317179285 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
15 Hb_010931_100 0.1350441686 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
16 Hb_002890_220 0.1360902952 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
17 Hb_010578_090 0.1361936046 - - HEV2.1 [Hevea brasiliensis]
18 Hb_000720_180 0.1367835389 - - -
19 Hb_004738_090 0.137475289 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000563_540 0.1387088257 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]

Gene co-expression network

sample Hb_003018_180 Hb_003018_180 Hb_000130_390 Hb_000130_390 Hb_003018_180--Hb_000130_390 Hb_001140_160 Hb_001140_160 Hb_003018_180--Hb_001140_160 Hb_000957_040 Hb_000957_040 Hb_003018_180--Hb_000957_040 Hb_002298_040 Hb_002298_040 Hb_003018_180--Hb_002298_040 Hb_004545_150 Hb_004545_150 Hb_003018_180--Hb_004545_150 Hb_001780_060 Hb_001780_060 Hb_003018_180--Hb_001780_060 Hb_000130_390--Hb_000957_040 Hb_000130_390--Hb_002298_040 Hb_012347_010 Hb_012347_010 Hb_000130_390--Hb_012347_010 Hb_000130_390--Hb_001140_160 Hb_005016_130 Hb_005016_130 Hb_000130_390--Hb_005016_130 Hb_001140_160--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001140_160--Hb_000762_020 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_012347_010 Hb_010872_060 Hb_010872_060 Hb_000957_040--Hb_010872_060 Hb_002027_300 Hb_002027_300 Hb_000957_040--Hb_002027_300 Hb_000193_230 Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_000078_030 Hb_000078_030 Hb_002298_040--Hb_000078_030 Hb_002298_040--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080 Hb_000284_010 Hb_000284_010 Hb_002298_040--Hb_000284_010 Hb_010931_100 Hb_010931_100 Hb_004545_150--Hb_010931_100 Hb_002609_260 Hb_002609_260 Hb_004545_150--Hb_002609_260 Hb_002989_080 Hb_002989_080 Hb_004545_150--Hb_002989_080 Hb_000264_190 Hb_000264_190 Hb_004545_150--Hb_000264_190 Hb_005488_100 Hb_005488_100 Hb_004545_150--Hb_005488_100 Hb_000563_540 Hb_000563_540 Hb_004545_150--Hb_000563_540 Hb_001454_390 Hb_001454_390 Hb_001780_060--Hb_001454_390 Hb_001780_060--Hb_004738_090 Hb_001780_060--Hb_004545_150 Hb_001780_060--Hb_000500_310 Hb_002875_090 Hb_002875_090 Hb_001780_060--Hb_002875_090 Hb_003906_120 Hb_003906_120 Hb_001780_060--Hb_003906_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
467.081 5.35986 1.59176 15.1032 248.339 184.066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
404.601 168.269 221.047 14.6596 2.62543

CAGE analysis