Hb_003813_200

Information

Type -
Description -
Location Contig3813: 130040-143552
Sequence    

Annotation

kegg
ID rcu:RCOM_1728300
description serine/threonine kinase, putative (EC:2.7.10.2)
nr
ID XP_012078057.1
description PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID A0A067K9S7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13032 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38643: 136499-139069
cDNA
(Sanger)
(ID:Location)		 036_G17r.ab1: 138369-139069

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_200 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
2 Hb_007416_200 0.0609758349 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
3 Hb_000093_130 0.1063874806 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
4 Hb_000692_170 0.1120168579 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
5 Hb_001956_050 0.1168664804 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
6 Hb_000025_750 0.118225213 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
7 Hb_000684_300 0.1198185645 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
8 Hb_001473_190 0.1225349271 - - 50S ribosomal protein L20 [Hevea brasiliensis]
9 Hb_005333_020 0.1252095172 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
10 Hb_000849_150 0.1347466551 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
11 Hb_074683_020 0.1358607398 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
12 Hb_002192_070 0.1362349168 - - -
13 Hb_001227_110 0.1362430903 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
14 Hb_000613_020 0.1363507274 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
15 Hb_005714_040 0.1392581787 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001348_140 0.1398381297 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007017_060 0.1415570711 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
18 Hb_001663_110 0.1424130175 - - RNA binding protein, putative [Ricinus communis]
19 Hb_011930_010 0.143032904 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
20 Hb_001956_120 0.1430559134 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003813_200 Hb_003813_200 Hb_007416_200 Hb_007416_200 Hb_003813_200--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_003813_200--Hb_000093_130 Hb_000692_170 Hb_000692_170 Hb_003813_200--Hb_000692_170 Hb_001956_050 Hb_001956_050 Hb_003813_200--Hb_001956_050 Hb_000025_750 Hb_000025_750 Hb_003813_200--Hb_000025_750 Hb_000684_300 Hb_000684_300 Hb_003813_200--Hb_000684_300 Hb_007416_200--Hb_000093_130 Hb_007416_200--Hb_000684_300 Hb_005333_020 Hb_005333_020 Hb_007416_200--Hb_005333_020 Hb_007416_200--Hb_001956_050 Hb_006588_090 Hb_006588_090 Hb_007416_200--Hb_006588_090 Hb_001227_110 Hb_001227_110 Hb_000093_130--Hb_001227_110 Hb_000116_570 Hb_000116_570 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000093_130--Hb_000025_750 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020 Hb_000692_170--Hb_000025_750 Hb_060437_010 Hb_060437_010 Hb_000692_170--Hb_060437_010 Hb_005725_070 Hb_005725_070 Hb_000692_170--Hb_005725_070 Hb_000692_170--Hb_001227_110 Hb_000692_170--Hb_000093_130 Hb_002728_020 Hb_002728_020 Hb_000692_170--Hb_002728_020 Hb_000714_020 Hb_000714_020 Hb_001956_050--Hb_000714_020 Hb_011930_010 Hb_011930_010 Hb_001956_050--Hb_011930_010 Hb_011609_030 Hb_011609_030 Hb_001956_050--Hb_011609_030 Hb_004137_030 Hb_004137_030 Hb_001956_050--Hb_004137_030 Hb_000025_750--Hb_001227_110 Hb_000849_150 Hb_000849_150 Hb_000025_750--Hb_000849_150 Hb_001408_090 Hb_001408_090 Hb_000025_750--Hb_001408_090 Hb_002025_140 Hb_002025_140 Hb_000025_750--Hb_002025_140 Hb_000684_300--Hb_000093_130 Hb_000684_300--Hb_001473_190 Hb_000684_300--Hb_005333_020 Hb_000684_300--Hb_000116_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3832 8.99002 6.12301 1.30728 21.3433 14.403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1261 8.02449 3.80096 1.8302 0.98806

CAGE analysis