Hb_000684_300

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig684: 309195-311991
Sequence    

Annotation

kegg
ID cic:CICLE_v10012920mg
description hypothetical protein
nr
ID XP_006428883.1
description hypothetical protein CICLE_v10012920mg [Citrus clementina]
swissprot
ID P25209
description Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1
trembl
ID V4S422
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012920mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54007: 309267-311591 , PASA_asmbl_54008: 310662-311591 , PASA_asmbl_54009: 309191-311709 , PASA_asmbl_54011: 312340-316465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_300 0.0 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
2 Hb_007416_200 0.0897075349 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
3 Hb_000093_130 0.1001582213 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
4 Hb_001473_190 0.1193272163 - - 50S ribosomal protein L20 [Hevea brasiliensis]
5 Hb_003813_200 0.1198185645 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_005333_020 0.120897995 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
7 Hb_000116_570 0.1293805938 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
8 Hb_000692_170 0.1305657052 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
9 Hb_009178_020 0.1318147952 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
10 Hb_000504_170 0.1339681162 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
11 Hb_006588_090 0.1340357147 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
12 Hb_183510_010 0.1364134174 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
13 Hb_001474_030 0.1403896859 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
14 Hb_007017_060 0.1412038205 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
15 Hb_001227_110 0.1425852169 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
16 Hb_000740_070 0.145043855 - - -
17 Hb_027380_160 0.1473236253 - - -
18 Hb_045046_010 0.1483543648 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
19 Hb_000264_060 0.1485491566 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
20 Hb_074683_020 0.1487337574 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_300 Hb_000684_300 Hb_007416_200 Hb_007416_200 Hb_000684_300--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_000684_300--Hb_000093_130 Hb_001473_190 Hb_001473_190 Hb_000684_300--Hb_001473_190 Hb_003813_200 Hb_003813_200 Hb_000684_300--Hb_003813_200 Hb_005333_020 Hb_005333_020 Hb_000684_300--Hb_005333_020 Hb_000116_570 Hb_000116_570 Hb_000684_300--Hb_000116_570 Hb_007416_200--Hb_003813_200 Hb_007416_200--Hb_000093_130 Hb_007416_200--Hb_005333_020 Hb_001956_050 Hb_001956_050 Hb_007416_200--Hb_001956_050 Hb_006588_090 Hb_006588_090 Hb_007416_200--Hb_006588_090 Hb_001227_110 Hb_001227_110 Hb_000093_130--Hb_001227_110 Hb_000093_130--Hb_000116_570 Hb_000093_130--Hb_001473_190 Hb_000025_750 Hb_000025_750 Hb_000093_130--Hb_000025_750 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020 Hb_001473_190--Hb_000116_570 Hb_001703_130 Hb_001703_130 Hb_001473_190--Hb_001703_130 Hb_001473_190--Hb_003813_200 Hb_063409_020 Hb_063409_020 Hb_001473_190--Hb_063409_020 Hb_003813_200--Hb_000093_130 Hb_000692_170 Hb_000692_170 Hb_003813_200--Hb_000692_170 Hb_003813_200--Hb_001956_050 Hb_003813_200--Hb_000025_750 Hb_153150_010 Hb_153150_010 Hb_005333_020--Hb_153150_010 Hb_000465_310 Hb_000465_310 Hb_005333_020--Hb_000465_310 Hb_005147_110 Hb_005147_110 Hb_005333_020--Hb_005147_110 Hb_001975_070 Hb_001975_070 Hb_005333_020--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_005333_020--Hb_011930_010 Hb_000640_210 Hb_000640_210 Hb_005333_020--Hb_000640_210 Hb_000016_280 Hb_000016_280 Hb_000116_570--Hb_000016_280 Hb_010883_080 Hb_010883_080 Hb_000116_570--Hb_010883_080 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.571 53.2518 16.798 3.9534 90.4835 50.5534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7257 42.1634 15.3669 14.0114 5.14264

CAGE analysis