Hb_001473_190

Information

Type -
Description -
Location Contig1473: 224764-230045
Sequence    

Annotation

kegg
ID tcc:TCM_027603
description Ribosomal protein L20
nr
ID ADR71306.1
description 50S ribosomal protein L20 [Hevea brasiliensis]
swissprot
ID B6IPJ8
description 50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1
trembl
ID I3NMR9
description 50S ribosomal protein L20 OS=Hevea brasiliensis GN=RPL20 PE=2 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12011: 224782-228882
cDNA
(Sanger)
(ID:Location)		 030_H16.ab1: 224806-228863 , 047_K14.ab1: 224806-228836

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_190 0.0 - - 50S ribosomal protein L20 [Hevea brasiliensis]
2 Hb_000093_130 0.080530213 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
3 Hb_000116_570 0.1118858049 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
4 Hb_000684_300 0.1193272163 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
5 Hb_001703_130 0.1223734398 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
6 Hb_003813_200 0.1225349271 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_063409_020 0.1228615984 - - Calcium-binding protein, putative [Ricinus communis]
8 Hb_001922_130 0.1237245539 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
9 Hb_000692_170 0.1271811398 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
10 Hb_002897_040 0.1283317391 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
11 Hb_007416_200 0.1283557643 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
12 Hb_000025_750 0.1283751898 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
13 Hb_074683_020 0.1319108035 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
14 Hb_001474_030 0.135386235 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_003581_110 0.1361457621 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
16 Hb_000392_280 0.136454825 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
17 Hb_001227_110 0.1368558883 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
18 Hb_000504_170 0.1397103903 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
19 Hb_000849_150 0.1400389818 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
20 Hb_000264_060 0.1400430357 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001473_190 Hb_001473_190 Hb_000093_130 Hb_000093_130 Hb_001473_190--Hb_000093_130 Hb_000116_570 Hb_000116_570 Hb_001473_190--Hb_000116_570 Hb_000684_300 Hb_000684_300 Hb_001473_190--Hb_000684_300 Hb_001703_130 Hb_001703_130 Hb_001473_190--Hb_001703_130 Hb_003813_200 Hb_003813_200 Hb_001473_190--Hb_003813_200 Hb_063409_020 Hb_063409_020 Hb_001473_190--Hb_063409_020 Hb_001227_110 Hb_001227_110 Hb_000093_130--Hb_001227_110 Hb_000093_130--Hb_000116_570 Hb_000025_750 Hb_000025_750 Hb_000093_130--Hb_000025_750 Hb_007416_200 Hb_007416_200 Hb_000093_130--Hb_007416_200 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020 Hb_000016_280 Hb_000016_280 Hb_000116_570--Hb_000016_280 Hb_010883_080 Hb_010883_080 Hb_000116_570--Hb_010883_080 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_000684_300--Hb_007416_200 Hb_000684_300--Hb_000093_130 Hb_000684_300--Hb_003813_200 Hb_005333_020 Hb_005333_020 Hb_000684_300--Hb_005333_020 Hb_000684_300--Hb_000116_570 Hb_002805_170 Hb_002805_170 Hb_001703_130--Hb_002805_170 Hb_001703_130--Hb_000116_570 Hb_001703_130--Hb_063409_020 Hb_001703_130--Hb_010883_080 Hb_000281_010 Hb_000281_010 Hb_001703_130--Hb_000281_010 Hb_001703_130--Hb_000685_080 Hb_003813_200--Hb_007416_200 Hb_003813_200--Hb_000093_130 Hb_000692_170 Hb_000692_170 Hb_003813_200--Hb_000692_170 Hb_001956_050 Hb_001956_050 Hb_003813_200--Hb_001956_050 Hb_003813_200--Hb_000025_750 Hb_000976_080 Hb_000976_080 Hb_063409_020--Hb_000976_080 Hb_005846_020 Hb_005846_020 Hb_063409_020--Hb_005846_020 Hb_001473_080 Hb_001473_080 Hb_063409_020--Hb_001473_080 Hb_004920_060 Hb_004920_060 Hb_063409_020--Hb_004920_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
684.784 250.35 127.125 51.2295 665.961 338.842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
129.288 148.994 57.0408 31.1977 35.4974

CAGE analysis