Hb_000548_050

Information

Type -
Description -
Location Contig548: 93310-94326
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12570g
description POPTRDRAFT_820652; hypothetical protein
nr
ID XP_002312425.2
description hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HJ82
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12570g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48042: 92777-93453 , PASA_asmbl_48044: 89670-94501 , PASA_asmbl_48045: 89670-94501 , PASA_asmbl_48046: 92010-92315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000548_050 0.0 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
2 Hb_012114_060 0.0767542114 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
3 Hb_005565_040 0.0977146675 - - conserved hypothetical protein [Ricinus communis]
4 Hb_052764_050 0.098157776 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
5 Hb_012799_110 0.104298845 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
6 Hb_011942_080 0.1050003545 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
7 Hb_000394_190 0.1056356121 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_000179_030 0.1070321343 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
9 Hb_001105_010 0.1081347421 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
10 Hb_000333_100 0.1098445588 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
11 Hb_002192_080 0.1110651703 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
12 Hb_003299_030 0.1110901701 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
13 Hb_011386_040 0.1111496987 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
14 Hb_000092_100 0.1118165153 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
15 Hb_001486_340 0.1130502584 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
16 Hb_008803_090 0.1140935937 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
17 Hb_000939_060 0.1147971439 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
18 Hb_031091_010 0.115943753 - - crooked neck protein, putative [Ricinus communis]
19 Hb_001142_050 0.1168316178 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
20 Hb_172141_010 0.1177964727 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]

Gene co-expression network

sample Hb_000548_050 Hb_000548_050 Hb_012114_060 Hb_012114_060 Hb_000548_050--Hb_012114_060 Hb_005565_040 Hb_005565_040 Hb_000548_050--Hb_005565_040 Hb_052764_050 Hb_052764_050 Hb_000548_050--Hb_052764_050 Hb_012799_110 Hb_012799_110 Hb_000548_050--Hb_012799_110 Hb_011942_080 Hb_011942_080 Hb_000548_050--Hb_011942_080 Hb_000394_190 Hb_000394_190 Hb_000548_050--Hb_000394_190 Hb_012114_060--Hb_005565_040 Hb_012114_060--Hb_052764_050 Hb_012114_060--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_012114_060--Hb_001168_040 Hb_000787_170 Hb_000787_170 Hb_012114_060--Hb_000787_170 Hb_000092_100 Hb_000092_100 Hb_005565_040--Hb_000092_100 Hb_001105_010 Hb_001105_010 Hb_005565_040--Hb_001105_010 Hb_029920_050 Hb_029920_050 Hb_005565_040--Hb_029920_050 Hb_005565_040--Hb_011942_080 Hb_001610_110 Hb_001610_110 Hb_052764_050--Hb_001610_110 Hb_001288_080 Hb_001288_080 Hb_052764_050--Hb_001288_080 Hb_001828_200 Hb_001828_200 Hb_052764_050--Hb_001828_200 Hb_001623_140 Hb_001623_140 Hb_052764_050--Hb_001623_140 Hb_012799_110--Hb_011942_080 Hb_012799_110--Hb_000394_190 Hb_003849_060 Hb_003849_060 Hb_012799_110--Hb_003849_060 Hb_011848_010 Hb_011848_010 Hb_012799_110--Hb_011848_010 Hb_033095_020 Hb_033095_020 Hb_012799_110--Hb_033095_020 Hb_003467_010 Hb_003467_010 Hb_012799_110--Hb_003467_010 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000394_190--Hb_000787_170 Hb_000394_190--Hb_003467_010 Hb_000394_190--Hb_033095_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
147.272 116.139 105.75 52.1125 95.295 210.721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.699 84.9311 62.7866 58.9621 18.227

CAGE analysis