Hb_088065_010

Information

Type -
Description -
Location Contig88065: 1104-1253
Sequence    

Annotation

kegg
ID gmx:100527253
description uncharacterized LOC100527253
nr
ID KHN48265.1
description hypothetical protein glysoja_007934 [Glycine soja]
swissprot
ID -
description -
trembl
ID I1LZ78
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0004177
description aminopeptidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61430: 1067-1255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088065_010 0.0 - - hypothetical protein glysoja_007934 [Glycine soja]
2 Hb_000523_100 0.119892891 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
3 Hb_073559_010 0.1479674224 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
4 Hb_000248_010 0.1495189689 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
5 Hb_088774_010 0.1574364176 - - -
6 Hb_005965_010 0.1575136156 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
7 Hb_032225_020 0.1679318594 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
8 Hb_007765_010 0.1757220373 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003581_010 0.1773441735 - - hypothetical protein VITISV_004687 [Vitis vinifera]
10 Hb_002960_050 0.1789788009 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
11 Hb_000808_240 0.1845375387 - - -
12 Hb_106005_010 0.1851592251 - - EG5651 [Manihot esculenta]
13 Hb_001722_020 0.1864349458 - - -
14 Hb_006455_110 0.1901864262 - - bromodomain-containing protein, putative [Ricinus communis]
15 Hb_001235_060 0.1935791409 - - -
16 Hb_126112_010 0.1954399611 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
17 Hb_128998_010 0.1955106771 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
18 Hb_005933_010 0.1962914095 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
19 Hb_169170_010 0.203580798 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
20 Hb_000248_030 0.2040780872 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]

Gene co-expression network

sample Hb_088065_010 Hb_088065_010 Hb_000523_100 Hb_000523_100 Hb_088065_010--Hb_000523_100 Hb_073559_010 Hb_073559_010 Hb_088065_010--Hb_073559_010 Hb_000248_010 Hb_000248_010 Hb_088065_010--Hb_000248_010 Hb_088774_010 Hb_088774_010 Hb_088065_010--Hb_088774_010 Hb_005965_010 Hb_005965_010 Hb_088065_010--Hb_005965_010 Hb_032225_020 Hb_032225_020 Hb_088065_010--Hb_032225_020 Hb_126112_010 Hb_126112_010 Hb_000523_100--Hb_126112_010 Hb_000523_100--Hb_088774_010 Hb_000295_090 Hb_000295_090 Hb_000523_100--Hb_000295_090 Hb_000003_180 Hb_000003_180 Hb_000523_100--Hb_000003_180 Hb_071923_010 Hb_071923_010 Hb_000523_100--Hb_071923_010 Hb_073559_010--Hb_000248_010 Hb_002960_050 Hb_002960_050 Hb_073559_010--Hb_002960_050 Hb_000248_030 Hb_000248_030 Hb_073559_010--Hb_000248_030 Hb_168737_010 Hb_168737_010 Hb_073559_010--Hb_168737_010 Hb_073559_010--Hb_005965_010 Hb_000248_010--Hb_002960_050 Hb_000248_010--Hb_000248_030 Hb_001235_060 Hb_001235_060 Hb_000248_010--Hb_001235_060 Hb_005933_010 Hb_005933_010 Hb_000248_010--Hb_005933_010 Hb_001722_020 Hb_001722_020 Hb_088774_010--Hb_001722_020 Hb_015930_010 Hb_015930_010 Hb_088774_010--Hb_015930_010 Hb_088774_010--Hb_071923_010 Hb_088774_010--Hb_000248_010 Hb_006455_110 Hb_006455_110 Hb_005965_010--Hb_006455_110 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_106005_010 Hb_106005_010 Hb_005965_010--Hb_106005_010 Hb_012807_080 Hb_012807_080 Hb_005965_010--Hb_012807_080 Hb_006455_080 Hb_006455_080 Hb_005965_010--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_005965_010--Hb_006455_090 Hb_032225_020--Hb_106005_010 Hb_032225_020--Hb_168737_010 Hb_003581_010 Hb_003581_010 Hb_032225_020--Hb_003581_010 Hb_032225_020--Hb_073559_010 Hb_000265_130 Hb_000265_130 Hb_032225_020--Hb_000265_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14274.8 5191.4 3366.32 10156.4 4331.59 85340.4
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10372 7089.59 5400.12 3001.5 1944.74

CAGE analysis