Hb_000295_090

Information

Type -
Description -
Location Contig295: 112844-113023
Sequence    

Annotation

kegg
ID gmx:100783050
description clathrin light chain 1-like
nr
ID KHN48365.1
description Clathrin light chain 2 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2SU28
description Clathrin light chain 2 OS=Glycine soja GN=glysoja_045297 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30848: 112986-114409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000295_090 0.0 - - Clathrin light chain 2 [Glycine soja]
2 Hb_002249_110 0.143982607 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
3 Hb_115578_010 0.1565610238 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
4 Hb_130134_020 0.1766368033 - - -
5 Hb_088774_010 0.1767418252 - - -
6 Hb_001385_090 0.181064029 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
7 Hb_000523_100 0.1827973026 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
8 Hb_001722_020 0.183036524 - - -
9 Hb_071923_010 0.1846470244 - - -
10 Hb_134310_020 0.1847251876 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
11 Hb_000059_090 0.1883073948 - - -
12 Hb_000707_070 0.2009954745 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
13 Hb_000200_040 0.2041025759 - - -
14 Hb_088065_010 0.2041614719 - - hypothetical protein glysoja_007934 [Glycine soja]
15 Hb_176117_010 0.2068581785 - - Cold-inducible RNA-binding protein [Morus notabilis]
16 Hb_124587_010 0.2071994485 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
17 Hb_000270_500 0.2163095808 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
18 Hb_003297_020 0.2224155508 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_000808_240 0.2251430995 - - -
20 Hb_181320_010 0.2255359656 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_000295_090 Hb_000295_090 Hb_002249_110 Hb_002249_110 Hb_000295_090--Hb_002249_110 Hb_115578_010 Hb_115578_010 Hb_000295_090--Hb_115578_010 Hb_130134_020 Hb_130134_020 Hb_000295_090--Hb_130134_020 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_001385_090 Hb_001385_090 Hb_000295_090--Hb_001385_090 Hb_000523_100 Hb_000523_100 Hb_000295_090--Hb_000523_100 Hb_071923_010 Hb_071923_010 Hb_002249_110--Hb_071923_010 Hb_070385_010 Hb_070385_010 Hb_002249_110--Hb_070385_010 Hb_003297_020 Hb_003297_020 Hb_002249_110--Hb_003297_020 Hb_002249_110--Hb_115578_010 Hb_002249_110--Hb_001385_090 Hb_115578_010--Hb_001385_090 Hb_134310_020 Hb_134310_020 Hb_115578_010--Hb_134310_020 Hb_115578_010--Hb_130134_020 Hb_000059_090 Hb_000059_090 Hb_115578_010--Hb_000059_090 Hb_130134_030 Hb_130134_030 Hb_130134_020--Hb_130134_030 Hb_130134_020--Hb_134310_020 Hb_178041_010 Hb_178041_010 Hb_130134_020--Hb_178041_010 Hb_003376_070 Hb_003376_070 Hb_130134_020--Hb_003376_070 Hb_088428_010 Hb_088428_010 Hb_130134_020--Hb_088428_010 Hb_001722_020 Hb_001722_020 Hb_088774_010--Hb_001722_020 Hb_088065_010 Hb_088065_010 Hb_088774_010--Hb_088065_010 Hb_015930_010 Hb_015930_010 Hb_088774_010--Hb_015930_010 Hb_088774_010--Hb_000523_100 Hb_088774_010--Hb_071923_010 Hb_000248_010 Hb_000248_010 Hb_088774_010--Hb_000248_010 Hb_001418_060 Hb_001418_060 Hb_001385_090--Hb_001418_060 Hb_001385_090--Hb_000523_100 Hb_001385_090--Hb_130134_020 Hb_000523_100--Hb_088065_010 Hb_126112_010 Hb_126112_010 Hb_000523_100--Hb_126112_010 Hb_000003_180 Hb_000003_180 Hb_000523_100--Hb_000003_180 Hb_000523_100--Hb_071923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
348.408 115.043 18.5352 133.142 250.322 1520.57
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.9161 119.945 19.4132 17.3039 0

CAGE analysis