Hb_001385_090

Information

Type -
Description -
Location Contig1385: 46318-46989
Sequence    

Annotation

kegg
ID pxb:103961618
description uncharacterized LOC103961618
nr
ID XP_012085125.1
description PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17557 PE=4 SV=1
Gene Ontology
ID GO:0006342
description nhl domain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001385_090 0.0 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
2 Hb_115578_010 0.1648556145 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
3 Hb_001418_060 0.1756846567 - - -
4 Hb_000295_090 0.181064029 - - Clathrin light chain 2 [Glycine soja]
5 Hb_002249_110 0.1900391284 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
6 Hb_000523_100 0.1994202744 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
7 Hb_130134_020 0.2018718117 - - -
8 Hb_070385_010 0.2212681977 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
9 Hb_005016_070 0.2227115694 - - -
10 Hb_001385_080 0.2229386351 - - -
11 Hb_000059_090 0.2245856648 - - -
12 Hb_059952_010 0.226105287 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
13 Hb_088774_010 0.2279503269 - - -
14 Hb_005839_010 0.2286121922 - - 30S ribosomal protein s13 [Camellia sinensis]
15 Hb_074979_030 0.231560219 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
16 Hb_000962_010 0.2326931254 - - -
17 Hb_005933_010 0.2343810701 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
18 Hb_122567_020 0.2360112196 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
19 Hb_001235_060 0.2369335967 - - -
20 Hb_088065_010 0.2433995652 - - hypothetical protein glysoja_007934 [Glycine soja]

Gene co-expression network

sample Hb_001385_090 Hb_001385_090 Hb_115578_010 Hb_115578_010 Hb_001385_090--Hb_115578_010 Hb_001418_060 Hb_001418_060 Hb_001385_090--Hb_001418_060 Hb_000295_090 Hb_000295_090 Hb_001385_090--Hb_000295_090 Hb_002249_110 Hb_002249_110 Hb_001385_090--Hb_002249_110 Hb_000523_100 Hb_000523_100 Hb_001385_090--Hb_000523_100 Hb_130134_020 Hb_130134_020 Hb_001385_090--Hb_130134_020 Hb_115578_010--Hb_000295_090 Hb_134310_020 Hb_134310_020 Hb_115578_010--Hb_134310_020 Hb_115578_010--Hb_002249_110 Hb_115578_010--Hb_130134_020 Hb_000059_090 Hb_000059_090 Hb_115578_010--Hb_000059_090 Hb_001418_060--Hb_130134_020 Hb_060054_010 Hb_060054_010 Hb_001418_060--Hb_060054_010 Hb_074979_030 Hb_074979_030 Hb_001418_060--Hb_074979_030 Hb_000589_230 Hb_000589_230 Hb_001418_060--Hb_000589_230 Hb_005016_070 Hb_005016_070 Hb_001418_060--Hb_005016_070 Hb_000295_090--Hb_002249_110 Hb_000295_090--Hb_130134_020 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_000295_090--Hb_000523_100 Hb_071923_010 Hb_071923_010 Hb_002249_110--Hb_071923_010 Hb_070385_010 Hb_070385_010 Hb_002249_110--Hb_070385_010 Hb_003297_020 Hb_003297_020 Hb_002249_110--Hb_003297_020 Hb_088065_010 Hb_088065_010 Hb_000523_100--Hb_088065_010 Hb_126112_010 Hb_126112_010 Hb_000523_100--Hb_126112_010 Hb_000523_100--Hb_088774_010 Hb_000003_180 Hb_000003_180 Hb_000523_100--Hb_000003_180 Hb_000523_100--Hb_071923_010 Hb_130134_030 Hb_130134_030 Hb_130134_020--Hb_130134_030 Hb_130134_020--Hb_134310_020 Hb_178041_010 Hb_178041_010 Hb_130134_020--Hb_178041_010 Hb_003376_070 Hb_003376_070 Hb_130134_020--Hb_003376_070 Hb_088428_010 Hb_088428_010 Hb_130134_020--Hb_088428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.5603 7.83352 8.71999 25.5985 21.3164 231.705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1713 2.14572 0.976648 2.16841 0.527801

CAGE analysis