Hb_130134_030

Information

Type transcription factor
Description TF Family: C3H
Location Contig130134: 4342-4575
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07380g
description POPTRDRAFT_244304; hypothetical protein
nr
ID KDP28701.1
description hypothetical protein JCGZ_14472 [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14472 PE=4 SV=1
Gene Ontology
ID GO:0046872
description f-box and wd40 domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130134_030 0.0 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
2 Hb_130134_020 0.1137965719 - - -
3 Hb_178041_010 0.1457929747 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
4 Hb_088428_010 0.1505852771 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
5 Hb_003376_070 0.1508811407 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
6 Hb_121467_010 0.1607485623 - - tubulin-specific chaperone E, putative [Ricinus communis]
7 Hb_077211_010 0.1675614016 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
8 Hb_002411_130 0.1751577944 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
9 Hb_159307_010 0.1778719287 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_003492_010 0.182201326 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
11 Hb_009119_030 0.1824869488 - - GMFP4 [Medicago truncatula]
12 Hb_070385_010 0.1857273426 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
13 Hb_003297_020 0.18835922 - - unknown [Populus trichocarpa x Populus deltoides]
14 Hb_171788_010 0.1893072083 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
15 Hb_000441_160 0.1932174068 - - ARF GTPase activator, putative [Ricinus communis]
16 Hb_002742_070 0.196601243 - - PREDICTED: villin-4-like [Jatropha curcas]
17 Hb_003157_030 0.2000372843 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
18 Hb_001767_120 0.2045431523 - - -
19 Hb_002815_060 0.2076397564 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
20 Hb_101020_010 0.208268929 - - -

Gene co-expression network

sample Hb_130134_030 Hb_130134_030 Hb_130134_020 Hb_130134_020 Hb_130134_030--Hb_130134_020 Hb_178041_010 Hb_178041_010 Hb_130134_030--Hb_178041_010 Hb_088428_010 Hb_088428_010 Hb_130134_030--Hb_088428_010 Hb_003376_070 Hb_003376_070 Hb_130134_030--Hb_003376_070 Hb_121467_010 Hb_121467_010 Hb_130134_030--Hb_121467_010 Hb_077211_010 Hb_077211_010 Hb_130134_030--Hb_077211_010 Hb_134310_020 Hb_134310_020 Hb_130134_020--Hb_134310_020 Hb_000295_090 Hb_000295_090 Hb_130134_020--Hb_000295_090 Hb_130134_020--Hb_178041_010 Hb_130134_020--Hb_003376_070 Hb_130134_020--Hb_088428_010 Hb_002742_070 Hb_002742_070 Hb_178041_010--Hb_002742_070 Hb_051437_010 Hb_051437_010 Hb_178041_010--Hb_051437_010 Hb_002815_060 Hb_002815_060 Hb_178041_010--Hb_002815_060 Hb_178041_010--Hb_088428_010 Hb_171788_010 Hb_171788_010 Hb_178041_010--Hb_171788_010 Hb_088428_010--Hb_121467_010 Hb_142751_010 Hb_142751_010 Hb_088428_010--Hb_142751_010 Hb_009119_030 Hb_009119_030 Hb_088428_010--Hb_009119_030 Hb_000486_060 Hb_000486_060 Hb_088428_010--Hb_000486_060 Hb_003157_030 Hb_003157_030 Hb_003376_070--Hb_003157_030 Hb_003492_010 Hb_003492_010 Hb_003376_070--Hb_003492_010 Hb_002411_130 Hb_002411_130 Hb_003376_070--Hb_002411_130 Hb_003376_070--Hb_009119_030 Hb_003376_070--Hb_002742_070 Hb_000159_110 Hb_000159_110 Hb_121467_010--Hb_000159_110 Hb_121467_010--Hb_009119_030 Hb_121467_010--Hb_002411_130 Hb_001767_120 Hb_001767_120 Hb_121467_010--Hb_001767_120 Hb_070469_010 Hb_070469_010 Hb_121467_010--Hb_070469_010 Hb_183980_010 Hb_183980_010 Hb_077211_010--Hb_183980_010 Hb_007137_060 Hb_007137_060 Hb_077211_010--Hb_007137_060 Hb_006960_030 Hb_006960_030 Hb_077211_010--Hb_006960_030 Hb_003297_020 Hb_003297_020 Hb_077211_010--Hb_003297_020 Hb_001935_190 Hb_001935_190 Hb_077211_010--Hb_001935_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
488.436 354.629 188.179 444.065 692.566 1844.22
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6407 59.1024 73.961 108.594 19.2371

CAGE analysis