Hb_002411_130

Information

Type -
Description -
Location Contig2411: 127198-127938
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19260g
description POPTRDRAFT_647353; hypothetical protein
nr
ID XP_011020447.1
description PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
swissprot
ID Q8L5A7
description Cytosolic sulfotransferase 15 OS=Arabidopsis thaliana GN=SOT15 PE=1 SV=1
trembl
ID A9PF32
description Sulfotransferase OS=Populus trichocarpa GN=POPTR_0003s19260g PE=2 SV=1
Gene Ontology
ID GO:0003824
description cytosolic sulfotransferase 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25274: 126962-127366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_130 0.0 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
2 Hb_000159_110 0.0973536399 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
3 Hb_001752_040 0.1202866052 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
4 Hb_009119_030 0.126478944 - - GMFP4 [Medicago truncatula]
5 Hb_121467_010 0.1426022184 - - tubulin-specific chaperone E, putative [Ricinus communis]
6 Hb_003376_070 0.1461511694 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
7 Hb_001767_120 0.1485838993 - - -
8 Hb_003492_010 0.1502812902 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
9 Hb_000365_160 0.1507059416 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
10 Hb_002320_070 0.1548069888 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000130_190 0.165658168 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
12 Hb_000302_160 0.1658063694 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
13 Hb_001005_150 0.1673036822 - - -
14 Hb_015354_010 0.1677555592 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_058702_010 0.1700932267 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
16 Hb_083043_010 0.1716665952 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
17 Hb_002815_060 0.1727062879 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
18 Hb_130134_030 0.1751577944 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
19 Hb_019813_010 0.1759554896 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
20 Hb_001901_080 0.1776265335 - - PREDICTED: xylose isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_002411_130 Hb_002411_130 Hb_000159_110 Hb_000159_110 Hb_002411_130--Hb_000159_110 Hb_001752_040 Hb_001752_040 Hb_002411_130--Hb_001752_040 Hb_009119_030 Hb_009119_030 Hb_002411_130--Hb_009119_030 Hb_121467_010 Hb_121467_010 Hb_002411_130--Hb_121467_010 Hb_003376_070 Hb_003376_070 Hb_002411_130--Hb_003376_070 Hb_001767_120 Hb_001767_120 Hb_002411_130--Hb_001767_120 Hb_083043_010 Hb_083043_010 Hb_000159_110--Hb_083043_010 Hb_000159_110--Hb_009119_030 Hb_000160_220 Hb_000160_220 Hb_000159_110--Hb_000160_220 Hb_000159_110--Hb_001752_040 Hb_058702_010 Hb_058702_010 Hb_000159_110--Hb_058702_010 Hb_000025_050 Hb_000025_050 Hb_001752_040--Hb_000025_050 Hb_001752_040--Hb_001767_120 Hb_106411_010 Hb_106411_010 Hb_001752_040--Hb_106411_010 Hb_019813_010 Hb_019813_010 Hb_001752_040--Hb_019813_010 Hb_000803_110 Hb_000803_110 Hb_001752_040--Hb_000803_110 Hb_002320_070 Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_009119_030--Hb_121467_010 Hb_088428_010 Hb_088428_010 Hb_121467_010--Hb_088428_010 Hb_121467_010--Hb_000159_110 Hb_121467_010--Hb_001767_120 Hb_070469_010 Hb_070469_010 Hb_121467_010--Hb_070469_010 Hb_003157_030 Hb_003157_030 Hb_003376_070--Hb_003157_030 Hb_003492_010 Hb_003492_010 Hb_003376_070--Hb_003492_010 Hb_003376_070--Hb_009119_030 Hb_002742_070 Hb_002742_070 Hb_003376_070--Hb_002742_070 Hb_130134_030 Hb_130134_030 Hb_003376_070--Hb_130134_030 Hb_005714_130 Hb_005714_130 Hb_001767_120--Hb_005714_130 Hb_002508_010 Hb_002508_010 Hb_001767_120--Hb_002508_010 Hb_128998_010 Hb_128998_010 Hb_001767_120--Hb_128998_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.69741 5.16427 3.30674 5.24188 9.82766 17.7298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96964 3.09531 0.597174 1.36046 1.63419

CAGE analysis