Hb_003492_010

Information

Type -
Description -
Location Contig3492: 19938-21142
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15580g
description DREPP plasma membrane polypeptide family protein
nr
ID XP_006385859.1
description DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
swissprot
ID Q96262
description Plasma membrane-associated cation-binding protein 1 OS=Arabidopsis thaliana GN=PCAP1 PE=1 SV=1
trembl
ID U5GMR2
description DREPP plasma membrane polypeptide family protein OS=Populus trichocarpa GN=POPTR_0003s15580g PE=4 SV=1
Gene Ontology
ID GO:0046658
description plasma membrane-associated cation-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36332: 19920-21015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003492_010 0.0 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
2 Hb_031069_020 0.142028078 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
3 Hb_003376_070 0.1454639783 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
4 Hb_002411_130 0.1502812902 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
5 Hb_002742_070 0.1526456154 - - PREDICTED: villin-4-like [Jatropha curcas]
6 Hb_001907_060 0.1535674087 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
7 Hb_010128_120 0.154197605 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
8 Hb_000413_170 0.1558493381 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
9 Hb_001901_080 0.1586324135 - - PREDICTED: xylose isomerase [Jatropha curcas]
10 Hb_007348_030 0.1660001954 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
11 Hb_006501_020 0.1660395639 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
12 Hb_009119_030 0.1667210116 - - GMFP4 [Medicago truncatula]
13 Hb_002742_080 0.1678091663 - - unknown [Populus trichocarpa]
14 Hb_000330_160 0.1731084863 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
15 Hb_002815_060 0.1736765574 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
16 Hb_003157_030 0.1746429362 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
17 Hb_000640_200 0.1763499628 - - hypothetical protein RCOM_1346600 [Ricinus communis]
18 Hb_003436_050 0.1774572097 - - arf gtpase-activating protein, putative [Ricinus communis]
19 Hb_002159_030 0.1789205847 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
20 Hb_001731_020 0.1806442441 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_003492_010 Hb_003492_010 Hb_031069_020 Hb_031069_020 Hb_003492_010--Hb_031069_020 Hb_003376_070 Hb_003376_070 Hb_003492_010--Hb_003376_070 Hb_002411_130 Hb_002411_130 Hb_003492_010--Hb_002411_130 Hb_002742_070 Hb_002742_070 Hb_003492_010--Hb_002742_070 Hb_001907_060 Hb_001907_060 Hb_003492_010--Hb_001907_060 Hb_010128_120 Hb_010128_120 Hb_003492_010--Hb_010128_120 Hb_078477_040 Hb_078477_040 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_001731_020 Hb_001731_020 Hb_031069_020--Hb_001731_020 Hb_000640_200 Hb_000640_200 Hb_031069_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_031069_020--Hb_006588_050 Hb_006501_020 Hb_006501_020 Hb_031069_020--Hb_006501_020 Hb_003157_030 Hb_003157_030 Hb_003376_070--Hb_003157_030 Hb_003376_070--Hb_002411_130 Hb_009119_030 Hb_009119_030 Hb_003376_070--Hb_009119_030 Hb_003376_070--Hb_002742_070 Hb_130134_030 Hb_130134_030 Hb_003376_070--Hb_130134_030 Hb_000159_110 Hb_000159_110 Hb_002411_130--Hb_000159_110 Hb_001752_040 Hb_001752_040 Hb_002411_130--Hb_001752_040 Hb_002411_130--Hb_009119_030 Hb_121467_010 Hb_121467_010 Hb_002411_130--Hb_121467_010 Hb_001767_120 Hb_001767_120 Hb_002411_130--Hb_001767_120 Hb_002815_060 Hb_002815_060 Hb_002742_070--Hb_002815_060 Hb_178041_010 Hb_178041_010 Hb_002742_070--Hb_178041_010 Hb_002742_070--Hb_003157_030 Hb_002742_070--Hb_010128_120 Hb_000330_160 Hb_000330_160 Hb_002742_070--Hb_000330_160 Hb_011953_030 Hb_011953_030 Hb_002742_070--Hb_011953_030 Hb_101151_020 Hb_101151_020 Hb_001907_060--Hb_101151_020 Hb_000792_110 Hb_000792_110 Hb_001907_060--Hb_000792_110 Hb_007348_030 Hb_007348_030 Hb_001907_060--Hb_007348_030 Hb_000211_090 Hb_000211_090 Hb_001907_060--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_001907_060--Hb_000608_340 Hb_002374_150 Hb_002374_150 Hb_001907_060--Hb_002374_150 Hb_000108_080 Hb_000108_080 Hb_010128_120--Hb_000108_080 Hb_001811_120 Hb_001811_120 Hb_010128_120--Hb_001811_120 Hb_004037_030 Hb_004037_030 Hb_010128_120--Hb_004037_030 Hb_000475_020 Hb_000475_020 Hb_010128_120--Hb_000475_020 Hb_007904_180 Hb_007904_180 Hb_010128_120--Hb_007904_180 Hb_010128_120--Hb_031069_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.9693 40.7516 10.7692 20.5794 58.6758 102.999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.17415 5.45199 2.85104 6.1809 16.5972

CAGE analysis