Hb_010128_120

Information

Type -
Description -
Location Contig10128: 78821-83637
Sequence    

Annotation

kegg
ID rcu:RCOM_1436680
description Aspartic proteinase precursor, putative (EC:3.4.23.40)
nr
ID KDP23334.1
description hypothetical protein JCGZ_23167 [Jatropha curcas]
swissprot
ID P42211
description Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2
trembl
ID A0A067JUW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23167 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00658: 79235-83609 , PASA_asmbl_00659: 79157-83621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010128_120 0.0 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
2 Hb_000108_080 0.0948128249 - - PREDICTED: importin-5 [Jatropha curcas]
3 Hb_001811_120 0.0954779254 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
4 Hb_004037_030 0.095628858 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
5 Hb_000475_020 0.107052626 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
6 Hb_007904_180 0.1105011609 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
7 Hb_031069_020 0.1116639081 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
8 Hb_102269_010 0.1124170537 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
9 Hb_006114_020 0.1131982618 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007044_230 0.1157428531 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
11 Hb_000029_320 0.1174324059 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
12 Hb_000487_220 0.1185588288 - - eukaryotic translation elongation factor, putative [Ricinus communis]
13 Hb_002815_060 0.1192608444 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
14 Hb_000504_150 0.1239195513 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
15 Hb_010180_040 0.1241327392 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
16 Hb_000329_490 0.1243041897 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
17 Hb_002742_070 0.1270905081 - - PREDICTED: villin-4-like [Jatropha curcas]
18 Hb_000300_580 0.1272161758 - - PREDICTED: importin-5-like [Jatropha curcas]
19 Hb_000640_200 0.1290842381 - - hypothetical protein RCOM_1346600 [Ricinus communis]
20 Hb_002070_070 0.1293872173 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010128_120 Hb_010128_120 Hb_000108_080 Hb_000108_080 Hb_010128_120--Hb_000108_080 Hb_001811_120 Hb_001811_120 Hb_010128_120--Hb_001811_120 Hb_004037_030 Hb_004037_030 Hb_010128_120--Hb_004037_030 Hb_000475_020 Hb_000475_020 Hb_010128_120--Hb_000475_020 Hb_007904_180 Hb_007904_180 Hb_010128_120--Hb_007904_180 Hb_031069_020 Hb_031069_020 Hb_010128_120--Hb_031069_020 Hb_000108_080--Hb_031069_020 Hb_003236_010 Hb_003236_010 Hb_000108_080--Hb_003236_010 Hb_000108_080--Hb_004037_030 Hb_000640_200 Hb_000640_200 Hb_000108_080--Hb_000640_200 Hb_005462_020 Hb_005462_020 Hb_000108_080--Hb_005462_020 Hb_022250_110 Hb_022250_110 Hb_000108_080--Hb_022250_110 Hb_001811_120--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_001811_120--Hb_002471_210 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_000250_070 Hb_000250_070 Hb_001811_120--Hb_000250_070 Hb_001811_120--Hb_007904_180 Hb_002291_070 Hb_002291_070 Hb_001811_120--Hb_002291_070 Hb_004037_030--Hb_007904_180 Hb_000002_440 Hb_000002_440 Hb_004037_030--Hb_000002_440 Hb_000699_250 Hb_000699_250 Hb_004037_030--Hb_000699_250 Hb_000096_180 Hb_000096_180 Hb_004037_030--Hb_000096_180 Hb_000239_070 Hb_000239_070 Hb_004037_030--Hb_000239_070 Hb_042487_010 Hb_042487_010 Hb_004037_030--Hb_042487_010 Hb_000475_020--Hb_002471_210 Hb_000475_020--Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000475_020--Hb_007849_020 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_007904_180--Hb_000475_020 Hb_007904_180--Hb_000002_440 Hb_000813_100 Hb_000813_100 Hb_007904_180--Hb_000813_100 Hb_006816_300 Hb_006816_300 Hb_007904_180--Hb_006816_300 Hb_078477_040 Hb_078477_040 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_001731_020 Hb_001731_020 Hb_031069_020--Hb_001731_020 Hb_031069_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_031069_020--Hb_006588_050 Hb_006501_020 Hb_006501_020 Hb_031069_020--Hb_006501_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.191 131.088 29.5655 71.1589 211.721 356.265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.6066 23.0011 37.7318 65.9812 96.5461

CAGE analysis