Hb_002508_010

Information

Type -
Description -
Location Contig2508: 27262-27585
Sequence    

Annotation

kegg
ID rcu:RCOM_1365250
description snf1-kinase beta subunit, plants, putative
nr
ID XP_002515602.1
description snf1-kinase beta subunit, plants, putative [Ricinus communis]
swissprot
ID Q9ZUU8
description SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
trembl
ID B9RPD3
description Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_1365250 PE=4 SV=1
Gene Ontology
ID GO:0005515
description snf1-related protein kinase regulatory subunit beta-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26216: 26983-41019
cDNA
(Sanger)
(ID:Location)		 050_L12.ab1: 27433-40960

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002508_010 0.0 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
2 Hb_116596_010 0.1253742686 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
3 Hb_041392_010 0.1329784969 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
4 Hb_106411_010 0.1371366991 - - Ribosomal protein S25 family protein [Theobroma cacao]
5 Hb_001767_120 0.1373037568 - - -
6 Hb_150204_010 0.1433874607 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_000025_050 0.1434100059 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
8 Hb_000991_070 0.1455383737 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
9 Hb_000606_080 0.1457875601 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
10 Hb_126295_010 0.1458167732 - - PREDICTED: protein SEH1 [Jatropha curcas]
11 Hb_023001_050 0.1471607754 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
12 Hb_002217_310 0.1480839603 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
13 Hb_001752_040 0.1494345832 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
14 Hb_005367_010 0.1516144375 - - -
15 Hb_033312_140 0.151833626 - - RNA and export factor-binding family protein [Populus trichocarpa]
16 Hb_168973_010 0.1552549791 - - -
17 Hb_000125_040 0.155968015 - - -
18 Hb_000229_040 0.156759487 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
19 Hb_003925_070 0.1568764285 - - ATOZI1, putative [Ricinus communis]
20 Hb_000850_040 0.1579987539 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002508_010 Hb_002508_010 Hb_116596_010 Hb_116596_010 Hb_002508_010--Hb_116596_010 Hb_041392_010 Hb_041392_010 Hb_002508_010--Hb_041392_010 Hb_106411_010 Hb_106411_010 Hb_002508_010--Hb_106411_010 Hb_001767_120 Hb_001767_120 Hb_002508_010--Hb_001767_120 Hb_150204_010 Hb_150204_010 Hb_002508_010--Hb_150204_010 Hb_000025_050 Hb_000025_050 Hb_002508_010--Hb_000025_050 Hb_153054_010 Hb_153054_010 Hb_116596_010--Hb_153054_010 Hb_000176_120 Hb_000176_120 Hb_116596_010--Hb_000176_120 Hb_152554_010 Hb_152554_010 Hb_116596_010--Hb_152554_010 Hb_005367_010 Hb_005367_010 Hb_116596_010--Hb_005367_010 Hb_002217_310 Hb_002217_310 Hb_116596_010--Hb_002217_310 Hb_033312_140 Hb_033312_140 Hb_041392_010--Hb_033312_140 Hb_003656_140 Hb_003656_140 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_000606_080 Hb_000606_080 Hb_041392_010--Hb_000606_080 Hb_041392_010--Hb_150204_010 Hb_150360_010 Hb_150360_010 Hb_041392_010--Hb_150360_010 Hb_106411_010--Hb_000025_050 Hb_076874_010 Hb_076874_010 Hb_106411_010--Hb_076874_010 Hb_003925_070 Hb_003925_070 Hb_106411_010--Hb_003925_070 Hb_001752_040 Hb_001752_040 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_005714_130 Hb_005714_130 Hb_001767_120--Hb_005714_130 Hb_001767_120--Hb_001752_040 Hb_128998_010 Hb_128998_010 Hb_001767_120--Hb_128998_010 Hb_121467_010 Hb_121467_010 Hb_001767_120--Hb_121467_010 Hb_171788_010 Hb_171788_010 Hb_001767_120--Hb_171788_010 Hb_150204_010--Hb_033312_140 Hb_004198_010 Hb_004198_010 Hb_150204_010--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_150204_010--Hb_004450_010 Hb_083043_010 Hb_083043_010 Hb_150204_010--Hb_083043_010 Hb_003434_060 Hb_003434_060 Hb_150204_010--Hb_003434_060 Hb_000025_050--Hb_076874_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_011671_090 Hb_011671_090 Hb_000025_050--Hb_011671_090 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_000025_050--Hb_003925_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7317 7.99945 14.4369 34.6691 33.4666 63.0462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.913 22.9712 16.602 8.68767 2.36048

CAGE analysis