Hb_130134_020

Information

Type -
Description -
Location Contig130134: 4153-4338
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130134_020 0.0 - - -
2 Hb_130134_030 0.1137965719 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
3 Hb_134310_020 0.1576869694 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
4 Hb_000295_090 0.1766368033 - - Clathrin light chain 2 [Glycine soja]
5 Hb_178041_010 0.1791209592 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
6 Hb_003376_070 0.1842439653 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
7 Hb_088428_010 0.1868008211 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
8 Hb_159307_010 0.1978253032 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_121467_010 0.1992152564 - - tubulin-specific chaperone E, putative [Ricinus communis]
10 Hb_001385_090 0.2018718117 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
11 Hb_171788_010 0.20192721 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
12 Hb_115578_010 0.2028316603 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
13 Hb_070385_010 0.2042020258 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
14 Hb_000976_030 0.2111524584 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
15 Hb_001767_120 0.2131631527 - - -
16 Hb_000003_180 0.2158464243 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000617_170 0.2161611656 - - -
18 Hb_019282_010 0.2167305224 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
19 Hb_001418_060 0.2195723454 - - -
20 Hb_002411_130 0.2205343844 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]

Gene co-expression network

sample Hb_130134_020 Hb_130134_020 Hb_130134_030 Hb_130134_030 Hb_130134_020--Hb_130134_030 Hb_134310_020 Hb_134310_020 Hb_130134_020--Hb_134310_020 Hb_000295_090 Hb_000295_090 Hb_130134_020--Hb_000295_090 Hb_178041_010 Hb_178041_010 Hb_130134_020--Hb_178041_010 Hb_003376_070 Hb_003376_070 Hb_130134_020--Hb_003376_070 Hb_088428_010 Hb_088428_010 Hb_130134_020--Hb_088428_010 Hb_130134_030--Hb_178041_010 Hb_130134_030--Hb_088428_010 Hb_130134_030--Hb_003376_070 Hb_121467_010 Hb_121467_010 Hb_130134_030--Hb_121467_010 Hb_077211_010 Hb_077211_010 Hb_130134_030--Hb_077211_010 Hb_000617_170 Hb_000617_170 Hb_134310_020--Hb_000617_170 Hb_115578_010 Hb_115578_010 Hb_134310_020--Hb_115578_010 Hb_000200_040 Hb_000200_040 Hb_134310_020--Hb_000200_040 Hb_134310_020--Hb_000295_090 Hb_000976_030 Hb_000976_030 Hb_134310_020--Hb_000976_030 Hb_002249_110 Hb_002249_110 Hb_000295_090--Hb_002249_110 Hb_000295_090--Hb_115578_010 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_001385_090 Hb_001385_090 Hb_000295_090--Hb_001385_090 Hb_000523_100 Hb_000523_100 Hb_000295_090--Hb_000523_100 Hb_002742_070 Hb_002742_070 Hb_178041_010--Hb_002742_070 Hb_051437_010 Hb_051437_010 Hb_178041_010--Hb_051437_010 Hb_002815_060 Hb_002815_060 Hb_178041_010--Hb_002815_060 Hb_178041_010--Hb_088428_010 Hb_171788_010 Hb_171788_010 Hb_178041_010--Hb_171788_010 Hb_003157_030 Hb_003157_030 Hb_003376_070--Hb_003157_030 Hb_003492_010 Hb_003492_010 Hb_003376_070--Hb_003492_010 Hb_002411_130 Hb_002411_130 Hb_003376_070--Hb_002411_130 Hb_009119_030 Hb_009119_030 Hb_003376_070--Hb_009119_030 Hb_003376_070--Hb_002742_070 Hb_088428_010--Hb_121467_010 Hb_142751_010 Hb_142751_010 Hb_088428_010--Hb_142751_010 Hb_088428_010--Hb_009119_030 Hb_000486_060 Hb_000486_060 Hb_088428_010--Hb_000486_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
289.965 243.425 59.4705 370.28 321.038 1522.8
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9252 77.2188 30.5715 72.4226 7.14073

CAGE analysis