Hb_000617_170

Information

Type -
Description -
Location Contig617: 111988-112674
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51271: 81507-113327 , PASA_asmbl_51274: 111621-112102
cDNA
(Sanger)
(ID:Location)		 007_M02.ab1: 81615-113263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_170 0.0 - - -
2 Hb_122567_020 0.1472916569 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
3 Hb_000976_030 0.1494227177 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
4 Hb_005933_010 0.1622913935 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
5 Hb_134310_020 0.1670042492 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
6 Hb_000248_010 0.1738330666 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
7 Hb_169170_010 0.1791226011 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
8 Hb_000248_030 0.1869258173 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
9 Hb_004958_040 0.1931443871 - - -
10 Hb_001235_060 0.1955732602 - - -
11 Hb_005318_020 0.1966238373 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
12 Hb_002960_050 0.2027949293 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
13 Hb_007083_050 0.2053208178 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
14 Hb_000003_180 0.2076515812 - - conserved hypothetical protein [Ricinus communis]
15 Hb_177103_010 0.2101903158 - - PREDICTED: histone H2AX [Elaeis guineensis]
16 Hb_007083_020 0.2115409994 - - hypothetical protein F775_15403 [Aegilops tauschii]
17 Hb_007447_020 0.2135989373 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
18 Hb_130134_020 0.2161611656 - - -
19 Hb_079212_010 0.2192650121 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000805_300 0.2203698496 - - -

Gene co-expression network

sample Hb_000617_170 Hb_000617_170 Hb_122567_020 Hb_122567_020 Hb_000617_170--Hb_122567_020 Hb_000976_030 Hb_000976_030 Hb_000617_170--Hb_000976_030 Hb_005933_010 Hb_005933_010 Hb_000617_170--Hb_005933_010 Hb_134310_020 Hb_134310_020 Hb_000617_170--Hb_134310_020 Hb_000248_010 Hb_000248_010 Hb_000617_170--Hb_000248_010 Hb_169170_010 Hb_169170_010 Hb_000617_170--Hb_169170_010 Hb_122567_020--Hb_005933_010 Hb_000805_300 Hb_000805_300 Hb_122567_020--Hb_000805_300 Hb_059952_010 Hb_059952_010 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_002960_050 Hb_002960_050 Hb_000976_030--Hb_002960_050 Hb_178041_010 Hb_178041_010 Hb_000976_030--Hb_178041_010 Hb_051437_010 Hb_051437_010 Hb_000976_030--Hb_051437_010 Hb_000976_030--Hb_000248_010 Hb_000976_030--Hb_169170_010 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_005933_010--Hb_059952_010 Hb_130134_020 Hb_130134_020 Hb_134310_020--Hb_130134_020 Hb_115578_010 Hb_115578_010 Hb_134310_020--Hb_115578_010 Hb_000200_040 Hb_000200_040 Hb_134310_020--Hb_000200_040 Hb_000295_090 Hb_000295_090 Hb_134310_020--Hb_000295_090 Hb_134310_020--Hb_000976_030 Hb_000248_010--Hb_002960_050 Hb_000248_010--Hb_000248_030 Hb_073559_010 Hb_073559_010 Hb_000248_010--Hb_073559_010 Hb_000248_010--Hb_001235_060 Hb_088065_010 Hb_088065_010 Hb_000248_010--Hb_088065_010 Hb_177103_010 Hb_177103_010 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_006198_090 Hb_006198_090 Hb_169170_010--Hb_006198_090 Hb_005318_020 Hb_005318_020 Hb_169170_010--Hb_005318_020 Hb_007447_020 Hb_007447_020 Hb_169170_010--Hb_007447_020 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12523 2.70296 0.928522 8.71871 6.96328 46.8838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74313 1.63981 0.912243 3.81845 0.494049

CAGE analysis