Hb_001385_080

Information

Type -
Description -
Location Contig1385: 40274-40901
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10550: 30399-44191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001385_080 0.0 - - -
2 Hb_122567_020 0.1498491892 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
3 Hb_005933_010 0.1613796237 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
4 Hb_059952_010 0.1716866252 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
5 Hb_000805_300 0.1770458949 - - -
6 Hb_001454_110 0.1859151464 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
7 Hb_101151_030 0.1893623231 - - -
8 Hb_079978_010 0.1898489953 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
9 Hb_001235_060 0.1963463873 - - -
10 Hb_005839_010 0.199292393 - - 30S ribosomal protein s13 [Camellia sinensis]
11 Hb_000291_130 0.2011768621 - - -
12 Hb_001691_160 0.2013853001 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002204_040 0.2021190929 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
14 Hb_000084_130 0.2040515016 - - -
15 Hb_001907_090 0.208269271 - - -
16 Hb_001579_040 0.2112010001 - - -
17 Hb_007447_020 0.2112025139 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
18 Hb_003927_150 0.2139815799 - - -
19 Hb_004958_040 0.2183159841 - - -
20 Hb_003623_020 0.2209959672 - - -

Gene co-expression network

sample Hb_001385_080 Hb_001385_080 Hb_122567_020 Hb_122567_020 Hb_001385_080--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_001385_080--Hb_005933_010 Hb_059952_010 Hb_059952_010 Hb_001385_080--Hb_059952_010 Hb_000805_300 Hb_000805_300 Hb_001385_080--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_001385_080--Hb_001454_110 Hb_101151_030 Hb_101151_030 Hb_001385_080--Hb_101151_030 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_005933_010--Hb_059952_010 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_059952_010--Hb_000805_300 Hb_059952_010--Hb_001454_110 Hb_000805_300--Hb_001454_110 Hb_000805_300--Hb_101151_030 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_000805_300--Hb_005933_010 Hb_001454_110--Hb_032531_040 Hb_032531_050 Hb_032531_050 Hb_001454_110--Hb_032531_050 Hb_001579_040 Hb_001579_040 Hb_001454_110--Hb_001579_040 Hb_001454_110--Hb_101151_030 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_000002_030 Hb_000002_030 Hb_101151_030--Hb_000002_030 Hb_101151_030--Hb_001235_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3051 0 5.89177 50.3117 14.3496 331.846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.14947 15.2766 0 7.65679 5.03869

CAGE analysis