Hb_003623_020

Information

Type -
Description -
Location Contig3623: 14426-14818
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37228: 14478-16521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003623_020 0.0 - - -
2 Hb_101151_030 0.1562425755 - - -
3 Hb_000805_300 0.1758974756 - - -
4 Hb_079978_010 0.1934994735 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
5 Hb_010172_060 0.1992837315 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
6 Hb_144552_010 0.2042374834 - - CC-NBS-LRR protein, putative [Theobroma cacao]
7 Hb_001691_160 0.2169473812 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011639_090 0.2173694483 - - PREDICTED: transcription factor bHLH75-like [Populus euphratica]
9 Hb_005839_010 0.2175290408 - - 30S ribosomal protein s13 [Camellia sinensis]
10 Hb_001235_060 0.2200823043 - - -
11 Hb_001385_080 0.2209959672 - - -
12 Hb_122567_020 0.2216383911 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
13 Hb_001454_110 0.223692506 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
14 Hb_003927_150 0.2246076756 - - -
15 Hb_005933_010 0.2363294714 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
16 Hb_000002_030 0.2379795711 - - -
17 Hb_005318_020 0.2381304139 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
18 Hb_007083_050 0.2436265974 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
19 Hb_000248_030 0.2456944042 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
20 Hb_032531_040 0.2458512243 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]

Gene co-expression network

sample Hb_003623_020 Hb_003623_020 Hb_101151_030 Hb_101151_030 Hb_003623_020--Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_003623_020--Hb_000805_300 Hb_079978_010 Hb_079978_010 Hb_003623_020--Hb_079978_010 Hb_010172_060 Hb_010172_060 Hb_003623_020--Hb_010172_060 Hb_144552_010 Hb_144552_010 Hb_003623_020--Hb_144552_010 Hb_001691_160 Hb_001691_160 Hb_003623_020--Hb_001691_160 Hb_101151_030--Hb_000805_300 Hb_101151_030--Hb_079978_010 Hb_000002_030 Hb_000002_030 Hb_101151_030--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_101151_030--Hb_001454_110 Hb_001235_060 Hb_001235_060 Hb_101151_030--Hb_001235_060 Hb_000805_300--Hb_001454_110 Hb_122567_020 Hb_122567_020 Hb_000805_300--Hb_122567_020 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_005933_010 Hb_005933_010 Hb_000805_300--Hb_005933_010 Hb_059952_010 Hb_059952_010 Hb_000805_300--Hb_059952_010 Hb_005318_020 Hb_005318_020 Hb_079978_010--Hb_005318_020 Hb_007083_050 Hb_007083_050 Hb_079978_010--Hb_007083_050 Hb_079978_010--Hb_122567_020 Hb_079978_010--Hb_000805_300 Hb_007447_020 Hb_007447_020 Hb_079978_010--Hb_007447_020 Hb_046609_010 Hb_046609_010 Hb_010172_060--Hb_046609_010 Hb_000510_070 Hb_000510_070 Hb_010172_060--Hb_000510_070 Hb_129358_010 Hb_129358_010 Hb_010172_060--Hb_129358_010 Hb_010172_060--Hb_144552_010 Hb_007639_010 Hb_007639_010 Hb_010172_060--Hb_007639_010 Hb_004947_070 Hb_004947_070 Hb_144552_010--Hb_004947_070 Hb_144552_010--Hb_101151_030 Hb_001969_050 Hb_001969_050 Hb_144552_010--Hb_001969_050 Hb_001676_040 Hb_001676_040 Hb_144552_010--Hb_001676_040 Hb_001691_160--Hb_005933_010 Hb_001691_160--Hb_000002_030 Hb_001691_160--Hb_001235_060 Hb_000115_270 Hb_000115_270 Hb_001691_160--Hb_000115_270 Hb_001385_080 Hb_001385_080 Hb_001691_160--Hb_001385_080 Hb_001691_160--Hb_101151_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22027 1.54647 0.556993 10.3307 5.82921 174.857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.912403 1.43514 1.41897 16.8457 3.09477

CAGE analysis