Hb_010172_060

Information

Type -
Description -
Location Contig10172: 57381-58504
Sequence    

Annotation

kegg
ID rcu:RCOM_1288570
description hypothetical protein
nr
ID XP_012072493.1
description PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1Q0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04672 PE=4 SV=1
Gene Ontology
ID GO:0019905
description myosin heavy chain-related family partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_060 0.0 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
2 Hb_046609_010 0.172295846 - - -
3 Hb_000510_070 0.1872306497 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Beta vulgaris subsp. vulgaris]
4 Hb_129358_010 0.1928769169 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
5 Hb_003623_020 0.1992837315 - - -
6 Hb_144552_010 0.2040818754 - - CC-NBS-LRR protein, putative [Theobroma cacao]
7 Hb_007639_010 0.2123232945 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
8 Hb_000005_210 0.2177520716 - - -
9 Hb_000041_170 0.2177520716 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
10 Hb_000047_040 0.2177520716 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
11 Hb_000072_260 0.2177520716 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
12 Hb_000081_170 0.2177520716 - - -
13 Hb_000088_250 0.2177520716 - - -
14 Hb_000110_220 0.2177520716 - - -
15 Hb_000110_360 0.2177520716 - - -
16 Hb_000111_510 0.2177520716 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000122_170 0.2177520716 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
18 Hb_000122_180 0.2177520716 - - -
19 Hb_000130_150 0.2177520716 - - -
20 Hb_000139_020 0.2177520716 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010172_060 Hb_010172_060 Hb_046609_010 Hb_046609_010 Hb_010172_060--Hb_046609_010 Hb_000510_070 Hb_000510_070 Hb_010172_060--Hb_000510_070 Hb_129358_010 Hb_129358_010 Hb_010172_060--Hb_129358_010 Hb_003623_020 Hb_003623_020 Hb_010172_060--Hb_003623_020 Hb_144552_010 Hb_144552_010 Hb_010172_060--Hb_144552_010 Hb_007639_010 Hb_007639_010 Hb_010172_060--Hb_007639_010 Hb_046609_010--Hb_129358_010 Hb_046609_010--Hb_007639_010 Hb_003362_010 Hb_003362_010 Hb_046609_010--Hb_003362_010 Hb_150498_010 Hb_150498_010 Hb_046609_010--Hb_150498_010 Hb_010272_020 Hb_010272_020 Hb_046609_010--Hb_010272_020 Hb_073171_060 Hb_073171_060 Hb_046609_010--Hb_073171_060 Hb_000005_210 Hb_000005_210 Hb_000510_070--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_000510_070--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_000510_070--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_000510_070--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_000510_070--Hb_000081_170 Hb_000088_250 Hb_000088_250 Hb_000510_070--Hb_000088_250 Hb_129358_010--Hb_007639_010 Hb_129358_010--Hb_003362_010 Hb_129358_010--Hb_150498_010 Hb_129358_010--Hb_010272_020 Hb_129358_010--Hb_073171_060 Hb_101151_030 Hb_101151_030 Hb_003623_020--Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_003623_020--Hb_000805_300 Hb_079978_010 Hb_079978_010 Hb_003623_020--Hb_079978_010 Hb_003623_020--Hb_144552_010 Hb_001691_160 Hb_001691_160 Hb_003623_020--Hb_001691_160 Hb_004947_070 Hb_004947_070 Hb_144552_010--Hb_004947_070 Hb_144552_010--Hb_101151_030 Hb_001969_050 Hb_001969_050 Hb_144552_010--Hb_001969_050 Hb_001676_040 Hb_001676_040 Hb_144552_010--Hb_001676_040 Hb_007639_010--Hb_003362_010 Hb_007639_010--Hb_150498_010 Hb_007639_010--Hb_010272_020 Hb_007639_010--Hb_073171_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.153523 0.0363226 0.133509 0 17.5577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.077858 1.1109 0.259523

CAGE analysis