Hb_004947_070

Information

Type -
Description -
Location Contig4947: 38016-41949
Sequence    

Annotation

kegg
ID cic:CICLE_v100140161m
description hypothetical protein
nr
ID XP_006447780.1
description hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID V4UA41
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100140161mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004947_070 0.0 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
2 Hb_144552_010 0.2056765817 - - CC-NBS-LRR protein, putative [Theobroma cacao]
3 Hb_000906_050 0.2494343869 - - -
4 Hb_010172_060 0.2567446097 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
5 Hb_006995_020 0.2993835918 - - hypothetical protein glysoja_017339 [Glycine soja]
6 Hb_001969_050 0.3089002009 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
7 Hb_173423_010 0.3091857233 - - conserved hypothetical protein [Ricinus communis]
8 Hb_057486_010 0.3195056992 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
9 Hb_003623_020 0.3259871065 - - -
10 Hb_041813_070 0.3270631628 - - -
11 Hb_001519_230 0.3320366025 - - PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
12 Hb_018591_040 0.3326111378 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
13 Hb_046609_010 0.3326366612 - - -
14 Hb_006920_050 0.3334469446 - - endo-1,4-beta-glucanase [Vigna radiata var. radiata]
15 Hb_028751_010 0.336901437 - - -
16 Hb_000696_320 0.338028217 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
17 Hb_007044_280 0.3401237074 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
18 Hb_129358_010 0.3412606813 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
19 Hb_053582_010 0.3429388252 - - -
20 Hb_001125_020 0.343151434 - - hypothetical protein B456_001G219500 [Gossypium raimondii]

Gene co-expression network

sample Hb_004947_070 Hb_004947_070 Hb_144552_010 Hb_144552_010 Hb_004947_070--Hb_144552_010 Hb_000906_050 Hb_000906_050 Hb_004947_070--Hb_000906_050 Hb_010172_060 Hb_010172_060 Hb_004947_070--Hb_010172_060 Hb_006995_020 Hb_006995_020 Hb_004947_070--Hb_006995_020 Hb_001969_050 Hb_001969_050 Hb_004947_070--Hb_001969_050 Hb_173423_010 Hb_173423_010 Hb_004947_070--Hb_173423_010 Hb_144552_010--Hb_010172_060 Hb_003623_020 Hb_003623_020 Hb_144552_010--Hb_003623_020 Hb_101151_030 Hb_101151_030 Hb_144552_010--Hb_101151_030 Hb_144552_010--Hb_001969_050 Hb_001676_040 Hb_001676_040 Hb_144552_010--Hb_001676_040 Hb_001377_440 Hb_001377_440 Hb_000906_050--Hb_001377_440 Hb_053582_010 Hb_053582_010 Hb_000906_050--Hb_053582_010 Hb_033883_050 Hb_033883_050 Hb_000906_050--Hb_033883_050 Hb_000906_050--Hb_010172_060 Hb_000906_050--Hb_144552_010 Hb_046609_010 Hb_046609_010 Hb_010172_060--Hb_046609_010 Hb_000510_070 Hb_000510_070 Hb_010172_060--Hb_000510_070 Hb_129358_010 Hb_129358_010 Hb_010172_060--Hb_129358_010 Hb_010172_060--Hb_003623_020 Hb_007639_010 Hb_007639_010 Hb_010172_060--Hb_007639_010 Hb_018591_040 Hb_018591_040 Hb_006995_020--Hb_018591_040 Hb_007044_280 Hb_007044_280 Hb_006995_020--Hb_007044_280 Hb_007659_010 Hb_007659_010 Hb_006995_020--Hb_007659_010 Hb_006995_020--Hb_001377_440 Hb_041813_070 Hb_041813_070 Hb_006995_020--Hb_041813_070 Hb_006995_020--Hb_001969_050 Hb_001969_050--Hb_101151_030 Hb_001969_050--Hb_053582_010 Hb_000951_050 Hb_000951_050 Hb_001969_050--Hb_000951_050 Hb_001969_050--Hb_003623_020 Hb_015930_010 Hb_015930_010 Hb_001969_050--Hb_015930_010 Hb_000580_040 Hb_000580_040 Hb_173423_010--Hb_000580_040 Hb_000833_080 Hb_000833_080 Hb_173423_010--Hb_000833_080 Hb_000696_320 Hb_000696_320 Hb_173423_010--Hb_000696_320 Hb_043950_010 Hb_043950_010 Hb_173423_010--Hb_043950_010 Hb_007545_160 Hb_007545_160 Hb_173423_010--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_173423_010--Hb_004410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0100665 0.00822486 0 0 0.155344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0117911 0.0212061

CAGE analysis