Hb_033883_050

Information

Type -
Description -
Location Contig33883: 22356-24618
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35418: 22535-27678 , PASA_asmbl_35419: 22528-27672
cDNA
(Sanger)
(ID:Location)		 049_L11.ab1: 22528-25234

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033883_050 0.0 - - -
2 Hb_110486_010 0.1870472191 - - -
3 Hb_001014_200 0.2019328378 - - -
4 Hb_174005_010 0.2261770962 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
5 Hb_000906_050 0.243612315 - - -
6 Hb_011537_120 0.2526121362 - - -
7 Hb_053582_010 0.2564023982 - - -
8 Hb_000510_070 0.2682504494 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Beta vulgaris subsp. vulgaris]
9 Hb_001377_440 0.269707475 - - -
10 Hb_002365_010 0.2733928567 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
11 Hb_010172_060 0.275364539 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
12 Hb_046609_010 0.2758850999 - - -
13 Hb_003927_150 0.2864559121 - - -
14 Hb_000005_210 0.2883074613 - - -
15 Hb_000041_170 0.2883074613 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
16 Hb_000047_040 0.2883074613 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
17 Hb_000072_260 0.2883074613 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
18 Hb_000081_170 0.2883074613 - - -
19 Hb_000088_250 0.2883074613 - - -
20 Hb_000110_220 0.2883074613 - - -

Gene co-expression network

sample Hb_033883_050 Hb_033883_050 Hb_110486_010 Hb_110486_010 Hb_033883_050--Hb_110486_010 Hb_001014_200 Hb_001014_200 Hb_033883_050--Hb_001014_200 Hb_174005_010 Hb_174005_010 Hb_033883_050--Hb_174005_010 Hb_000906_050 Hb_000906_050 Hb_033883_050--Hb_000906_050 Hb_011537_120 Hb_011537_120 Hb_033883_050--Hb_011537_120 Hb_053582_010 Hb_053582_010 Hb_033883_050--Hb_053582_010 Hb_046707_010 Hb_046707_010 Hb_110486_010--Hb_046707_010 Hb_037271_010 Hb_037271_010 Hb_110486_010--Hb_037271_010 Hb_110486_010--Hb_001014_200 Hb_000875_100 Hb_000875_100 Hb_110486_010--Hb_000875_100 Hb_121031_010 Hb_121031_010 Hb_110486_010--Hb_121031_010 Hb_001014_200--Hb_000875_100 Hb_001014_200--Hb_011537_120 Hb_001014_200--Hb_121031_010 Hb_034050_010 Hb_034050_010 Hb_001014_200--Hb_034050_010 Hb_174005_010--Hb_053582_010 Hb_000005_210 Hb_000005_210 Hb_174005_010--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_174005_010--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_174005_010--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_174005_010--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_174005_010--Hb_000081_170 Hb_001377_440 Hb_001377_440 Hb_000906_050--Hb_001377_440 Hb_000906_050--Hb_053582_010 Hb_010172_060 Hb_010172_060 Hb_000906_050--Hb_010172_060 Hb_004947_070 Hb_004947_070 Hb_000906_050--Hb_004947_070 Hb_144552_010 Hb_144552_010 Hb_000906_050--Hb_144552_010 Hb_086287_020 Hb_086287_020 Hb_011537_120--Hb_086287_020 Hb_011537_120--Hb_000875_100 Hb_000003_690 Hb_000003_690 Hb_011537_120--Hb_000003_690 Hb_011537_120--Hb_110486_010 Hb_101151_030 Hb_101151_030 Hb_053582_010--Hb_101151_030 Hb_053582_010--Hb_001377_440 Hb_053582_010--Hb_086287_020 Hb_056531_040 Hb_056531_040 Hb_053582_010--Hb_056531_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 12.1899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64933 0 0 0.614577 0

CAGE analysis