Hb_046707_010

Information

Type -
Description -
Location Contig46707: 93-1625
Sequence    

Annotation

kegg
ID bvg:104887079
description uncharacterized LOC104887079
nr
ID XP_010669968.1
description PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046707_010 0.0 - - PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
2 Hb_037271_010 0.0731259272 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_110486_010 0.1342048109 - - -
4 Hb_121031_010 0.2520539076 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
5 Hb_000875_100 0.2528037977 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
6 Hb_034050_010 0.2533331556 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
7 Hb_004162_300 0.2703667882 - - monovalent cation:proton antiporter, putative [Ricinus communis]
8 Hb_027014_010 0.2733062962 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_163115_010 0.2906580877 - - -
10 Hb_001014_200 0.2994165117 - - -
11 Hb_183366_010 0.3130354478 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
12 Hb_033883_050 0.3176978142 - - -
13 Hb_001809_040 0.3209193062 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
14 Hb_003116_020 0.3216219542 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
15 Hb_000599_060 0.3313483965 - - PREDICTED: legumin A-like [Jatropha curcas]
16 Hb_004532_010 0.349107385 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
17 Hb_011537_120 0.3654797426 - - -
18 Hb_002352_040 0.376518507 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
19 Hb_033044_010 0.3788307324 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X3 [Gossypium raimondii]
20 Hb_003304_040 0.3849723492 - - hypothetical protein CICLE_v10003343mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_046707_010 Hb_046707_010 Hb_037271_010 Hb_037271_010 Hb_046707_010--Hb_037271_010 Hb_110486_010 Hb_110486_010 Hb_046707_010--Hb_110486_010 Hb_121031_010 Hb_121031_010 Hb_046707_010--Hb_121031_010 Hb_000875_100 Hb_000875_100 Hb_046707_010--Hb_000875_100 Hb_034050_010 Hb_034050_010 Hb_046707_010--Hb_034050_010 Hb_004162_300 Hb_004162_300 Hb_046707_010--Hb_004162_300 Hb_037271_010--Hb_110486_010 Hb_037271_010--Hb_034050_010 Hb_037271_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_037271_010--Hb_027014_010 Hb_037271_010--Hb_121031_010 Hb_033883_050 Hb_033883_050 Hb_110486_010--Hb_033883_050 Hb_001014_200 Hb_001014_200 Hb_110486_010--Hb_001014_200 Hb_110486_010--Hb_000875_100 Hb_110486_010--Hb_121031_010 Hb_121031_010--Hb_034050_010 Hb_121031_010--Hb_000875_100 Hb_121031_010--Hb_004162_300 Hb_121031_010--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_121031_010--Hb_163115_010 Hb_183366_010 Hb_183366_010 Hb_121031_010--Hb_183366_010 Hb_000875_100--Hb_034050_010 Hb_000875_100--Hb_001014_200 Hb_000875_100--Hb_004162_300 Hb_000875_100--Hb_027014_010 Hb_000875_100--Hb_163115_010 Hb_034050_010--Hb_004162_300 Hb_034050_010--Hb_027014_010 Hb_034050_010--Hb_163115_010 Hb_034050_010--Hb_183366_010 Hb_004162_300--Hb_027014_010 Hb_004162_300--Hb_163115_010 Hb_004162_300--Hb_183366_010 Hb_001809_040 Hb_001809_040 Hb_004162_300--Hb_001809_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0548645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0419076 0 0 0.013212 0

CAGE analysis