Hb_004162_300

Information

Type -
Description -
Location Contig4162: 265198-274324
Sequence    

Annotation

kegg
ID rcu:RCOM_0474910
description monovalent cation:proton antiporter, putative
nr
ID XP_002523725.1
description monovalent cation:proton antiporter, putative [Ricinus communis]
swissprot
ID Q9FFB8
description Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1
trembl
ID B9SCK6
description Monovalent cation:proton antiporter, putative OS=Ricinus communis GN=RCOM_0474910 PE=4 SV=1
Gene Ontology
ID GO:0015299
description cation h(+) antiporter 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_300 0.0 - - monovalent cation:proton antiporter, putative [Ricinus communis]
2 Hb_027014_010 0.0078867335 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_163115_010 0.0475932455 - - -
4 Hb_034050_010 0.066915397 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
5 Hb_121031_010 0.0774965236 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
6 Hb_183366_010 0.0896313195 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
7 Hb_001809_040 0.103069283 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
8 Hb_000599_060 0.1200927066 - - PREDICTED: legumin A-like [Jatropha curcas]
9 Hb_000875_100 0.1384434618 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
10 Hb_004532_010 0.1475636935 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
11 Hb_012193_020 0.22441951 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
12 Hb_046707_010 0.2703667882 - - PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
13 Hb_001014_200 0.2719359912 - - -
14 Hb_037271_010 0.2792426437 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_007192_110 0.2926313255 - - -
16 Hb_110486_010 0.3112949218 - - -
17 Hb_003304_040 0.3135547494 - - hypothetical protein CICLE_v10003343mg, partial [Citrus clementina]
18 Hb_124480_010 0.3192478758 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_000284_070 0.346018198 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
20 Hb_011401_010 0.3479029637 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]

Gene co-expression network

sample Hb_004162_300 Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_004162_300--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_004162_300--Hb_163115_010 Hb_034050_010 Hb_034050_010 Hb_004162_300--Hb_034050_010 Hb_121031_010 Hb_121031_010 Hb_004162_300--Hb_121031_010 Hb_183366_010 Hb_183366_010 Hb_004162_300--Hb_183366_010 Hb_001809_040 Hb_001809_040 Hb_004162_300--Hb_001809_040 Hb_027014_010--Hb_163115_010 Hb_027014_010--Hb_034050_010 Hb_027014_010--Hb_183366_010 Hb_027014_010--Hb_121031_010 Hb_027014_010--Hb_001809_040 Hb_163115_010--Hb_183366_010 Hb_163115_010--Hb_001809_040 Hb_000599_060 Hb_000599_060 Hb_163115_010--Hb_000599_060 Hb_004532_010 Hb_004532_010 Hb_163115_010--Hb_004532_010 Hb_034050_010--Hb_121031_010 Hb_000875_100 Hb_000875_100 Hb_034050_010--Hb_000875_100 Hb_034050_010--Hb_163115_010 Hb_034050_010--Hb_183366_010 Hb_121031_010--Hb_000875_100 Hb_121031_010--Hb_163115_010 Hb_121031_010--Hb_183366_010 Hb_183366_010--Hb_001809_040 Hb_183366_010--Hb_000599_060 Hb_183366_010--Hb_004532_010 Hb_001809_040--Hb_000599_060 Hb_001809_040--Hb_004532_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00691707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00866844 0 0 0 0

CAGE analysis